github.com - new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the genome. Such seeds form the basis for BASE...
github.com - nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is observed. Specifically, nQuire uses next-generation sequencing data to distinguish...
Research Associate (RA) under Network Project on Agricultural Bioinformatics
Name of the Project : Network Project on Agricultural Bioinformatics Number of positions One
Qualifications : Ph.D Degree in Bioinformatics/Biotechnology/...
Walk-in-interview will be held on 23 February, 2015 at 11.00 a.m. for the following temporary positions in the DBT (U-EXCEL) sponsored project entitled “Sequencing genomes of some bacteria that invade/resides in tomato plant” under the Principal...
github.com - Parliament2 identifies structural variants in a given sample relative to a reference genome. These structural variants cover large deletion events that are called as Deletions of a region, Insertions of a sequence into a region, Duplications of a...
No. ACTREC/Advt./ 7 /2015
Title of the Project
Research Associate
(One position)
DBTs Biotechnology/Bioinformatics training centre
PI Dr. Ashok Varma
Duration of the Project Six Months from the date of appointment, can be extended...
Experience in Next Generation Sequencing (NGS) application and interest in Genomics/ Clinical / Translational Applications. OR Good computational programming skills and deep interest in working on interface of Genomics and Clinical application....
Be proficient in LINUX, know perl or python, understand biology and Next Generation Sequencing.
The intern will port Agile Assay Design pipelines into Galaxy.
The intern will also learn to develope his/her own bioinformatics pipelines for PCR or...
NGS quality control and trimming are essential steps to ensure reliable and accurate data for analysis. While the "ifs" highlight the clear benefits of these steps, the "buts" remind us of the potential pitfalls. By adopting best practices and...