Jit
Enthusiast computational biologist with business dream !!!
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Cerulean: A hybrid assembly using high throughput short and long reads
By Rahul Nayak 2405 days agosourceforge.net - Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads. Cerulean v0.1 has been implemented with bacterial genomes in mind. The method is fully described in...Laj: viewing and manipulating the output from pairwise alignment programs
By Abhimanyu Singh 2866 days agowww.bx.psu.edu - Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can display interactive dotplot, pip, and text representations of the alignments, a diagram showing the locations of exons and repeats, and...FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
By Jit 2329 days agogithub.com - Here is the command to run the tool: python finisherSC.py destinedFolder mummerPath If you are running on server computer and would like to use multiple threads, then the following commands can generate 20 threads to run FinisherSC. python...Bioinformatics opening at ICGEB NEW DELHI
ICGEB NEW DELHI Applications are invited for: Junior Research Fellow, in a DBT funded project, is available in Translational Health Group, ICGEB, New Delhi Qualifications: Education: M.Sc. (preferably in Biotechnology, Life Sciences or...SNPGenie
By Jit 2836 days agogithub.com - SNPGenie is a Perl script for estimating evolutionary parameters, mainly from pooled next-generation sequencing (NGS) single-nucleotide polymorphism (SNP) variant data. SNP reports (acceptable in a variety of formats) much each correspond to a...WGS Celera Assembler version 8.3rc2
By Jit 2826 days agowgs-assembler.sourceforge.net - These are release notes for Celera Assembler version 8.3rc2, which was released on May 24, 2015.This distribution package provides a stable, tested, documented version of the software. The distribution is usable on most Unix-like platforms,...ChromHMM: Chromatin state discovery and characterization
By Abhimanyu Singh 2817 days agocompbio.mit.edu - ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial...StringTie Transcript assembly and quantification for RNA-Seq
By Jit 1670 days agoccb.jhu.edu - StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It uses a novel network flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length...Ten International Scholarships for Indian Biotechnology and Bioinformatics Students
By Priya Singh 2796 days ago Comments (10)10 International Scholarships for Indian Students3D de novo assembly (3D DNA) pipeline
By Jit 1798 days agogithub.com - For a detailed description of the pipeline and how it integrates with other tools designed by the Aiden Lab see Genome Assembly Cookbook on http://aidenlab.org/assembly. For the original version of the pipeline and to reproduce the...
