Jit
Enthusiast computational biologist with business dream !!!
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Rebaler: program for conducting reference-based assemblies using long reads.
By Jit 2261 days agogithub.com - Rebaler is a program for conducting reference-based assemblies using long reads. It relies mainly on minimap2 for alignment and Racon for making consensus sequences. I made Rebaler for bacterial genomes (specifically for the...Five key traits to seek out in potential bioinformatics candidates !!!
By Jit 3396 days agoOnce your research group is ready to make a larger investment and hire a bioinformatician to gain a competitive edge, there are several key traits to seek out in potential candidates. The best bioinformatician are:-Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
By Neel 2191 days agogithub.com - Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the architectural advances that have proven successful...JRF in Bioinformatics @ Central University of Rajasthan
Central University of Rajasthan Department of Biotechnology School of Life Sciences Bandarsindri, Distt. Ajmer Applications are invited for one JRF position supported by DST sponsored project in Bioinformatics with Dr. Tarun Kumar...NextDenovo: string graph-based de novo assembler for TGS long reads
By Jit 1787 days agogithub.com - NextDenovo is a string graph-based de novo assembler for TGS long reads. It uses a "correct-then-assemble" strategy similar to canu, but requires significantly less computing resources and storages. After assembly, the per-base error rate...Bioinformatics Training Fellowship !!
Applications are invited from suitable candidates for six months ‘Training Fellowship’ in Bioinformatics under the BTISNET program of DBT in the Distributed Information Sub center (DISC) facility at NIPGR, New Delhi, under the supervision of Dr....Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
By Jit 1751 days agogithub.com - Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier, using many of the architectural advances that have proven successful in image classification. Unlike...SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
By BioStar 1562 days agogithub.com - SqueezeMeta is a full automatic pipeline for metagenomics/metatranscriptomics, covering all steps of the analysis. SqueezeMeta includes multi-metagenome support allowing the co-assembly of related metagenomes and the retrieval of individual genomes...RA Bioinformatics at University of Delhi
BIOINFORMATICS INFRASTRUCTURE FACILITY GARGI COLLEGE (University of Delhi) SiriFort Road, New Delhi-110049 Walk- in- interview Bioinformatics Infrastructure Facility (BIF), Gargi College, University of Delhi invites to appear for interview...AlignGraph2: similar genome-assisted reassembly pipeline for PacBio long reads
By Rahul Nayak 1353 days agogithub.com - AlignGraph2 is the second version of AlignGraph for PacBio long reads. It extends and refines contigs assembled from the long reads with a published genome similar to the sequencing genome. More...
