Jit
Enthusiast computational biologist with business dream !!!
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Comparative genomics visualisation tools !
By Neel 1009 days agocmdcolin.github.io - Comparative genomics visualisation tools !LSC: Improving PacBio Long Read Accuracy by Short Read Alignment
By Abhimanyu Singh 2269 days agowww.healthcare.uiowa.edu - Added Command line argument support. Multi-stage execution modes. Support for parallelization. Now execution proceeds in batches of long reads the size of which can be set by --long_read_batch_size N. Better compressed intermediate files. Added...Venn Diagrams on R Studio
By Jitendra Prajapati 3133 days ago Comments (2)rstudio-pubs-static.s3.amazonaws.com - First step: Install & load “VennDiagram” package. # install.packages('VennDiagram') library(VennDiagram) Second step: Load data Add filepath if “catdoge.csv” is not in working-directory. d <-...RCircos: an R package for Circos 2D track plots
By Jit 3108 days agobitbucket.org - RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulation pipelines for presenting large-scale multi-sample genomic research data. It...Stand-alone programs for Bioinformatician
By Radha Agarkar 3107 days agohgdownload.cse.ucsc.edu - This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications...Ideoplot
By Shruti Paniwala 2839 days agogithub.com - Simple ideogram plotting and annotation in R. Basic usage: Rscript Ideoplot.R --heatmap hm.bed --annotate annotations.bed --out ideogram.pdf -or- Rscript Ideoplot.R --annotate annotations.bed Options --ideobed, i A bed file of reference...BRIG
By Jit 2836 days agobrig.sourceforge.net - BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is available...PhenoGram
By Jit 2817 days ago Comments (1)ritchielab.psu.edu - With PhenoGram researchers can create chomosomal ideograms annotated with lines in color at specific base-pair locations, or colored base-pair to base-pair regions, with or without other annotation. PhenoGram allows for annotation of chromosomal...UpSetR Shiny App!
By Jit 2779 days agogehlenborglab.shinyapps.io - UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout enables the effective representation of associated data, such...Five points for bioinformatics software/tools
By Jitendra Narayan 4127 days ago Comments (1)Some five points to keep in mind for bioinformatics software/tools
