github.com - ALPACA requires Celera Assembler 8.3 or later. It is recommended to build Celera Assembler from source. (Why? The pre-built binaries CA_8.3rc1 and CA8.3rc2 will work for any large data set.
Detail paper...
bix.ucsd.edu - BLASR (Basic Local Alignment with Successive Refinement) for mapping Single Molecule Sequencing (SMS) reads that are thousands to tens of thousands of bases long with divergence between the read and genome dominated by insertion and deletion...
UNIVERSITY OF HYDERABAD
(A Central University established by an Act of Parliament)
Prof. C.R.Rao Road, P.O. Central University Campus, Gachibowli,
Hyderabad - 500 046
Advt.No. UH/HR/Rectt-2015/02 dt. 12.10.2015
The University invites...
github.com - ReMILO, a reference assisted misassembly detection algorithm that uses both short reads and PacBio SMRT long reads. ReMILO aligns the initial short reads to both the contigs and reference genome, and then constructs a novel data structure called...
SRF/JRF job position in National Research Centre on Plant Biotechnology (NRCPB)
JRF /1
Qualification : Master’s Degree in Biotechnology / life sciences with four years Bachelor’s Degree (or) Master’s Degree in Biotechnology / life sciences...
sourceforge.net - Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like...
Teaching, Non-teaching Careers 2015
Uttaranchal College of Science & Technology - Dehra Dun, Uttarakhand
Teaching, Non-teaching Careers 2015 at Uttaranchal College of Science and Technology, Dehradun
Below mentioned teaching and...
bioinfo.ut.ee - FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of variant-specific k-mer pairs that are unique in human genome, counts the...
No. Bio/NCIM/3
Project Assistant II Jobs opportunity in National Chemical Laboratory (NCL) on temporary basis
Project Code No. : GAP312626
Title of the Project : Microbial ecology and distribution of geochemical cycling genes in an hot...
github.com - This is a scaffold assembler designed for stLFR reads[1]. It uses the link-reads information from stLFR reads to assemble contigs to scaffolds.
Here is an illustration of this pipeline: