Jit
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VCFtools: perform common tasks with VCF files such as file validation, file merging, intersecting,...
By Rahul Nayak 2416 days agovcftools.sourceforge.net - VCFtools contains a Perl API (Vcf.pm) and a number of Perl scripts that can be used to perform common tasks with VCF files such as file validation, file merging, intersecting, complements, etc. The Perl tools support all versions of the VCF...irishgrid: Irish Grid Mapping System
By Jit 3737 days agocode.google.com - Perl module for creating geographic 10km-square maps using either SVG or PNG (with GD library) output format. Originally design to map the location of objects in a 10 km map IrishGrid includes: native support of the Irish Grid System (see...MGERT: Mobile Genetic Elements Retrieving Tool
By Neel 2133 days agogithub.com - MGERT is a computational pipeline for easy retrieving of MGE's coding sequences of a particular family from genome assemblies. MGERT utilizes several established bioinformatic tools combined into single pipeline which hides different...kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
By Rahul Nayak 2487 days agogithub.com - The k-mer Weighted Inner Product. This software implements a de novo, alignment free measure of sample genetic dissimilarity which operates upon raw sequencing reads. It is able to calculate the genetic dissimilarity between samples without any...GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes
By Abhi 1178 days agogithub.com - A phylogeny based comparative genomics software to analyze the genetic environment of genes. The user can select one or several taxa and provide one or several reference protein(s). Genomes and plasmids (based on user choice) will be downloaded from...MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
By Neel 3225 days agojournals.plos.org - MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads generated by all the major sequencing technologies,...Cancer Dependency Map
By Jit 1862 days agodepmap.sanger.ac.uk - The consequences of alterations in the DNA of cancer cells and subsequent vulnerabilities are not fully understood. This project aims to assign a dependency to every cancer cell in a patient which could be exploited to develop new therapies. This...Sequence Tube Maps: displays multiple genomic sequences in the form of a tube map
By Jit 1835 days agogithub.com - A JavaScript module for the visualization of genomic sequence graphs. It automatically generates a "tube map"-like visualization of sequence graphs which have been created with vg. (https://github.com/vgteam/vg) Link to working demo:...How to install Perl modules manually, using CPAN command, and other quick ways
By Jit 4269 days ago Comments (9)Perl Module Installation
For Ads Rotator to work, the container element must have child elements.