Jit
Enthusiast computational biologist with business dream !!!
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The Tree That Learned to Read Genomes
By BioStar 24 days agoA recent study by Webster and Chapman introduces Buscogeny, an open-source bioinformatics pipeline designed to make this process easier. The tool uses BUSCO (Benchmarking Universal Single-Copy Orthologs), which identifies conserved genes that are...SVbyEye: R Package to visualize alignments between two or multiple DNA sequences
By LEGE 748 days agogithub.com - R Package to visualize alignments between two or multiple DNA sequences includinga number of functionalities to facilitate processing of alignments in PAF format. SVbyEye, an open-source R package to visualize and annotate sequence-to-sequence...Recombination detection tool
By Jit 3898 days ago Comments (2)github.com - A program to detect recombination hotspots using population genetic data. More at https://github.com/auton1/LDhotRelease Notes for Genome Workbench 2.10.5
By Jit 3797 days agoNew Features in latest release New ProSplign tool integrated with Genome WorkbenchGKNO
By Neel 3789 days agohttp://gkno.me/ - gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise...LoRMA: a tool for correcting sequencing errors in long reads such those produced by Pacific...
By Jit 3763 days agowww.cs.helsinki.fi - LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication: L. Salmela, R. Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de...SVfinder: Tool for detecting genomic rearrangement form DNA-seq data
By Robert M Willioms 3216 days agogithub.com - SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.CViT: Chromosome Viewing Tool
By Rahul Nayak 2833 days agosourceforge.net - CViT - Chromosome Viewing Tool. A collection of Perl scripts that enable quick visualizations of features on linkage groups, psuedochromosomes or cytogenetic maps. Intended for whole-genome views of data but can be used to create images of single...QuasR: Quantification and annotation of short reads in R
By Neel 1879 days agowww.bioconductor.org - The QuasR package (short for Quantify and annotate short reads in R) integrates the functionality of several R packages (such as IRanges (Lawrence et al. 2013) and Rsamtools) and external software (e.g. bowtie, through the Rbowtie package, and...From DNA Chaos to a Clear Microbial Story
By BioStar 45 days agoImagine opening a metagenomic dataset and finding millions of DNA fragments, each carrying a tiny piece of information about the microbial world inside a sample. The challenge is not generating the data — it is turning that data into a meaningful...
