Rahul Nayak
A Bioinformatician
Our Sponsors
Related items
fragScaff: Genome Assembly with Contiguity Preserving Transposition
By Jit 3007 days agosourceforge.net - Contiguity preserving transposition and sequencing (CPT-seq) is an entirely in vitro means of generating libraries comprised of 9216 indexed pools, each of which contains thousands of sparsely sequenced long fragments ranging from 5 kilobases to...List of popular bioinformatics software/tools
By Jitendra Narayan 4770 days ago Comments (28)samtools.sourceforge.net - In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.
Tools for Searching Repeats And Palindromic Sequences
Last updated 3035 days ago by Poonam Mahapatra Comments (2)What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-Value Paradox ). These sequences were later...-
Tools for Protein-Protein Docking !
Last updated 3026 days ago by Poonam MahapatraPredicting the structure of protein–protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct solutions, and properly dealing with molecular flexibility and conformational changes.... Exploring RNA Sequence Analysis: Tools for Every Bioinformatician
By Neel 602 days agoThe bioinformatics landscape for RNA sequence analysis is vast, with tools catering to specific needs. Whether you’re studying coding RNAs, non-coding RNAs, or exploring RNA-protein interactions, the right tools can transform your data into...List of tools frequently used while genome assembly
By BioStar 2754 days agoTo decide which strategy should be our “preferred” genome assembly approach based on data rather than my gut-feeling about the “best assembly” I decided to do some testing with a known “true” reference E Coli K12 MG1655-
Bioinformatics tools for genome assembly !
Last updated 1110 days ago by BioStarThere are numerous genome assembly tools available, each with its strengths and weaknesses. Here is a list of some widely used genome assembly tools as of my last update in September 2021: SPAdes: An assembler specifically designed for... GATB : Genome Analysis Toolbox with de-Bruijn graph
By Jit 3753 days agohttps://gatb.inria.fr/ - The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge...GAEMR
By Jit 3706 days agowww.broadinstitute.org - The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly analysis framework composed a number of integrated modules. These modules can be executed as a single program to generate a complete...Five points for bioinformatics software/tools
By Jitendra Narayan 4750 days ago Comments (1)Some five points to keep in mind for bioinformatics software/tools
