Jit
Enthusiast computational biologist with business dream !!!
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Ra assembler - a de novo DNA assembler for third generation sequencing data
By biogeek 2522 days agogithub.com - Integration of the Ra assembler - a de novo DNA assembler for third generation sequencing data developed on Faculty of Electrical Engineering and Computing (FER), Ruder Boskovic Institute (RBI) and Genome Institute of Singapore (GIS). Ra is in...3D de novo assembly (3D DNA) pipeline
By Jit 1755 days agogithub.com - For a detailed description of the pipeline and how it integrates with other tools designed by the Aiden Lab see Genome Assembly Cookbook on http://aidenlab.org/assembly. For the original version of the pipeline and to reproduce the...ENCODE3: A collection of research articles and related content describing the Encyclopedia of DNA...
By Shruti Paniwala 1567 days agoENCODE 3 A collection of research articles and related content describing the Encyclopedia of DNA Elements, its datasets and tools.Metabuli 분리 improves metagenomic read classification
By Abhi 538 days agogithub.com - Metabuli 분리 improves metagenomic read classification through metamers, DNA-AA k-mers, to be sensitive and specific, recovering 99% and 98% of DNA or AA classifiers. Metabuli is metagenomic classifier that jointly analyze both DNA and amino...Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
By BioStar 1752 days agogithub.com - Rcorrector has an accuracy higher than or comparable to existing methods, including the only other method (SEECER) designed for RNA-seq reads, and is more time and memory efficient. With a 5 GB memory footprint for 100 million reads, it can be run...PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index
By Rahul Nayak 946 days agogithub.com - PuffAligner, a fast, accurate and versatile aligner built on top of the Pufferfish index. PuffAligner is able to produce highly sensitive alignments, similar to those of Bowtie2, but much more quickly. While exhibiting similar speed to the ultrafast...DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
By Abhimanyu Singh 2835 days agodagchainer.sourceforge.net - The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homology along with their genome coordinates. Using a scoring function which accounts...GOLD:Genomes Online Database
By Jit 2676 days agohttps://gold.jgi.doe.gov/ - GOLD:Genomes Online Database, is a World Wide Web resource for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. https://gold.jgi.doe.gov/Understanding liftOver !
By Rahul Nayak 2361 days agoLiftOver is a necesary step to bring all genetical analysis to the same reference build.
