Rahul Nayak
A Bioinformatician
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Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
By Jit 2282 days agowww.ncbi.nlm.nih.gov - Mulan: Multiple-sequence local alignment and visualization for studying function and evolution Mulan (http://mulan.dcode.org/), a novel method and a network server for comparing multiple draft and finished-quality sequences to identify functional...MSAProbs - Parallel and accurate multiple sequence alignment
By Neel 1963 days agomsaprobs.sourceforge.net - MSAProbs is a well-established state-of-the-art multiple sequence alignment algorithm for protein sequences. The design of MSAProbs is based on a combination of pair hidden Markov models and partition functions to calculate posterior...VG: variation graph data structures, interchange formats, alignment, genotyping, and variant...
By Jit 1761 days agogithub.com - Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of: nodes, which are labeled by sequences and ids edges, which connect two nodes via either of...UniAligner: a parameter-free framework for fast sequence alignment
By Abhi 259 days agogithub.com - UniAligner (formerly, TandemAligner) is the first parameter-free algorithm for sequence alignment that introduces a sequence-dependent alignment scoring that automatically changes for any pair of compared sequences. Classical alignment approaches,...Alvis: a tool for contig and read ALignment VISualisation and chimera detection
By LEGE 198 days agogithub.com - Alvis, a simple command line tool that can generate visualisations for a number of common alignment analysis tasks. Alvis is a fast and portable tool that accepts input in a variety of alignment formats and will output production ready vector...A fast package to parse BLAST
By Jitendra Narayan 4091 days ago, managBlaSTorage: a fast package to parsee and store BLAST resultsBLAST Ring Image Generator (BRIG)
By Anjana 2975 days agobrig.sourceforge.net - BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is available at:...New Layout for BLAST ftp Database Site
By Jit 1767 days ago Comments (1)New Layout for BLAST ftp Database SiteCircoletto: visualizing sequence similarity with Circos
By Jit 2478 days agotools.bat.infspire.org - Circoletto, an online visualization tool based on Circos, which provides a fast, aesthetically pleasing and informative overview of sequence similarity search results. Online version and downloadable software package for offline use (source code in...
