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Biological databases !
By BioStar 1780 days ago Comments (4)ftp.ncbi.nih.gov - Now a days there are a lots of genomics databases available around the world. This bookmark is created to provide all links in one place ... ftp://ftp.ncbi.nih.gov/genomes/ https://hgdownload.soe.ucsc.edu/downloads.htmlCarefully opt for human reference genome
By biogeek 1774 days agolh3.github.io - Heng Li posted several issues with the human reference genomes given in these resources and suggests the following compressed FASTA file to be used as hg38/GRCh38 human reference genome. if you map reads to GRCh38 or hg38, use the...PLAR: Pipeline for lncRNA annotation from RNA-seq data
By Abhi 1085 days agowww.weizmann.ac.il - Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), and synteny). One is comparing human GENCODE genes (from GENCODE v30) to lncRNAs...Refseq viraal genome sequences !
By Jit 1112 days agoftp.ncbi.nlm.nih.gov - List of all viruses on NCBI https://ftp.ncbi.nlm.nih.gov/refseq/release/viral/DIAL
By Abhimanyu Singh 2858 days agowww.bx.psu.edu - A computational pipeline for identifying single-base substitutions between two closely related genomes without the help of a reference genome. DIAL works even when the depth of coverage is insufficient for de novo assembly, and it can be extended to...Earth BioGenome Project
By Jit 2438 days agoThe central goal of the Earth BioGenome Project is to understand the evolution and organization of life on our planet by sequencing and functionally annotating the genomes of 1.5 million known species of eukaryotesfragScaff: Genome Assembly with Contiguity Preserving Transposition
By Jit 2419 days agosourceforge.net - Contiguity preserving transposition and sequencing (CPT-seq) is an entirely in vitro means of generating libraries comprised of 9216 indexed pools, each of which contains thousands of sparsely sequenced long fragments ranging from 5 kilobases to...RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
By Jit 1888 days agogithub.com - Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC: Fast and accurate reference-guided scaffolding of draft genomes. bioRxiv 2019. RaGOO is a tool for coalescing genome assembly contigs into...Project Associate-I | Project Associate-II | Senior Project Associate @ IGIB
Experience in Next Generation Sequencing (NGS) application and interest in Genomics/ Clinical / Translational Applications. OR Good computational programming skills and deep interest in working on interface of Genomics and Clinical application....Scripts for the analysis of HGT in genome sequence data.
By Jit 2584 days agogithub.com - Scripts for the analysis of HGT in genome sequence data
