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GenomeTools: The versatile open source genome analysis software
By Neel 1585 days agohttp://genometools.org/ - The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named...dna2bit: an ultra-fast and accurate genomic distance estimation software
By LEGE 279 days agogithub.com - dna2bit is a software tool developed in C++11, leveraging the capabilities of OpenMP for parallel computing and the popcount technique for efficient bit manipulation. It has been thoroughly tested using the g++ and clang compilers on both Linux and...maftools : Summarize, Analyze and Visualize MAF Files
By Neel 1991 days agowww.bioconductor.org - With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widely accepted and used to store somatic variants detected. The Cancer Genome Atlas Project has sequenced over 30 different cancers with sample size of...Bourque Lab
The goal of the lab is to understand mammalian genomes using comparative genomic and epigenomic analyses. Areas of interest include: the evolution of regulatory sequences, the role of transposable elements in gene regulation and the impact of genome...
Creating conda environment for python2.7
Last updated 2951 days ago by JitTIP: By default, environments are installed into the envs directory in your conda directory. Run conda create --help for information on specifying a different path. Use the Terminal or an Anaconda Prompt for the...Should you get sequenced? Not all bad genes predict disease
By Rahul Agarwal 4663 days agowww.today.com - “What we really don’t know yet is whether the predictive aspects of the genome are going to turn out to be beneficial or potentially harmful” “As we roll out genomic medicine we are fighting against this society-wide...FGENESH - Program for predicting multiple genes in genomic DNA sequences
By BioStar 2724 days agowww.softberry.com - FGENESH is the fastest (50-100 times faster than GenScan) and most accurate gene finder available - see the figure and the table below. In recent rice genome sequencing projects, it was cited "the most successful (gene finding) program (Yu et...GEO2R: compare two or more groups of Samples
By Rahul Nayak 1993 days agowww.ncbi.nlm.nih.gov - GEO2R to compare two or more groups of Samples in order to identify genes that are differentially expressed across experimental conditions.ncbi-datasets-cli -- Quickstart: command line tools !
By Jit 1642 days ago Comments (1)www.ncbi.nlm.nih.gov - Install and use the NCBI Datasets command line tools The NCBI Datasets datasets command line tools are datasets and dataformat . Use datasets to download biological sequence data across all domains of life from...2.4 Mb Genome Size for World's Biggest Virus
By Jitendra Narayan 4684 days agoA giant Pandoraviruses from alltogether different origin
