Rahul Nayak
A Bioinformatician
Our Sponsors
Related items
poRe: an R package for the visualization and analysis of nanopore sequencing data
By Jit 2589 days ago Comments (1)academic.oup.com - Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinION has huge potential applications. To enable these applications, the...netGO: R-Shiny package for network-integrated pathway enrichment analysis
By Jit 1778 days agogithub.com - netGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provides user-interactive visualization of enrichment analysis results and related networks. Currently, netGO supports analysis for four species...SVbyEye: R Package to visualize alignments between two or multiple DNA sequences
By LEGE 100 days agogithub.com - R Package to visualize alignments between two or multiple DNA sequences includinga number of functionalities to facilitate processing of alignments in PAF format. SVbyEye, an open-source R package to visualize and annotate sequence-to-sequence...Kmer: a suite of tools for DNA sequence analysis
By BioStar 1226 days agohelp.rc.ufl.edu - More at https://help.rc.ufl.edu/doc/Kmer This also includes: A2Amapper: ATAC, Assembly to Assembly Comparision tool: Comparative mapping between two genome assemblies (same species), or between two different genomes (cross...Kalign: fast multiple sequence alignment program for biological sequences.
By BioStar 1882 days agogithub.com - Kalign is a fast multiple sequence alignment program for biological sequences. Align sequences and output the alignment in MSF format: kalign -i BB11001.tfa -f msf -o out.msf Align sequences and output the alignment in clustal format: kalign...LIBSVM -- A Library for Support Vector Machines
By Neel 2703 days agowww.csie.ntu.edu.tw - LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM). It supports multi-class classification. Since version 2.8, it...SOAP2 : Short Oligonucleotide Analysis Package 2
By Poonam Mahapatra 2408 days agosoap.genomics.org.cn - SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment. The new program features in super fast and accurate alignment for huge amounts of...S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
By Abhimanyu Singh 2276 days agobitbucket.org - S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete). In S-plot2, whole eukaryotic chromosomes and smaller prokaryotic genomes can...SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
By BioStar 1592 days agogithub.com - SHAMAN is a shiny application for differential analysis of metagenomic data (16S, 18S, 23S, 28S, ITS and WGS) including bioinformatics treatment of raw reads for targeted metagenomics, statistical analysis and results visualization with a large...Common methods to discover tandem repeats
By BioStar 658 days agoTandem repeats are DNA sequences that are repeated in a contiguous manner in the genome.
