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Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
By Jit 2003 days agogenomearchitect.github.io - Apollo is a plug-in for the JBrowse Genome Viewer. In addition to genes and pseudogenes, users can annotate ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions, and transposable elements; each annotation type has its own...Phytozome v12.1: plant science community hub for accessing palnts genomic data
By Surabhi Chaudhary 1713 days agophytozome.jgi.doe.gov - Phytozome, the Plant Comparative Genomics portal of the Department of Energy's Joint Genome Institute, provides JGI users and the broader plant science community a hub for accessing, visualizing and analyzing JGI-sequenced plant genomes, as well as...Figeno: Tool for plotting sequencing data along genomic coordinates.
By LEGE 68 days agogithub.com - Tool for plotting sequencing data along genomic coordinates. FIGENO is a FIGure GENerator for GENOmics With figeno, you can plot various types of sequencing data along genomic coordinates. Video...SOAP2 : Short Oligonucleotide Analysis Package 2
By Poonam Mahapatra 2377 days agosoap.genomics.org.cn - SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment. The new program features in super fast and accurate alignment for huge amounts of...Genobuntu: Package for Next Generation Sequencing and Genome Assembly
By BioStar 1650 days agosourceforge.net - Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In its current version, Genobuntu supports pre assembly tools, genome assemblers as well as post assembly tools.Commonly used biological software and...Genobuntu: A software package containing more than 70 software and packages oriented towards NGS...
By BioStar 2175 days agosourceforge.net - Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In its current version, Genobuntu supports pre assembly tools, genome assemblers as well as post assembly tools. Commonly used biological...netGO: R-Shiny package for network-integrated pathway enrichment analysis
By Jit 1747 days agogithub.com - netGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provides user-interactive visualization of enrichment analysis results and related networks. Currently, netGO supports analysis for four species...kebabs: package provides functionality for kernel based analysis of biological sequences via...
By Rahul Nayak 996 days agowww.bioinf.jku.at - The kebabs package provides functionality for kernel based analysis of biological sequences via Support Vector Machine (SVM) based methods. Biological sequences include DNA, RNA, and amino acid (AA) sequences. Sequence kernels define...R package for visualising GO enrichment
By Jit 4143 days agoR package for visualising GO enrichment results as wordclouds is available at CRANUpcoming R Webinar
By Jitendra Narayan 4092 days agoUpcoming Webinar: Fast Semi-Parallel Linear and Logistic Regression for Genome-Wide Association Studies
