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Seal: SEquence ALignment evaluation suite
By Jit 2985 days agocompbio.case.edu - Seal is a comprehensive sequencing simulation and alignment tool evaluation suite. This software (implemented in Java) provides several utilities that can be used to evaluate alignment algorithms, including: Reading a pre-existing reference...Understanding your reads and mapping !
By Neel 2229 days agobioinformatics-core-shared-training.github.io - One of the best tutorial for beginners ... https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session4-seqIntro.htmlA fast package to parse BLAST
By Jitendra Narayan 4561 days ago, managBlaSTorage: a fast package to parsee and store BLAST resultsBLAST Ring Image Generator (BRIG)
By Anjana 3445 days agobrig.sourceforge.net - BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is available at:...NCBI Magic-BLAST
By Jit 2762 days agoncbi.github.io - Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of...Magic-BLAST
By Shruti Paniwala 2178 days agoncbi.github.io - Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of...Cleaner BLAST Databases for More Accurate Results
By LEGE 684 days agoRemoving contaminated sequences using NCBI quality assurance toolsRepeatMasker compatible blast tool
By Neel 2647 days agowww.repeatmasker.org - RMBlast is a RepeatMasker compatible version of the standard NCBI blastn program. The primary difference between this distribution and the NCBI distribution is the addition of a new program "rmblastn" for use with RepeatMasker and...Visualise blast results !
By Abhi 1244 days agokablammo.wasmuthlab.org - Kablammo helps you create interactive visualizations of BLAST results from your web browser. Find your most interesting alignments, list detailed parameters for each, and export a publication-ready vector image, all without installing any...Bioinformatics approach to Boar Taint
By Rahul Agarwal 4616 days ago Comments (3)Meat products obtained from intact male pigs often produce offensive smell or odour which is recognized as a complex genetic trait called boar taint.Androstenone and Skatole in the fat primarily cause boar taint. Metabolism of androstenone and...
