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Carrot2 clustering engine
By LEGE 1065 days agosearch.carrot2.org - This is the demo application of the Carrot2 clustering engine. It uses Carrot2's algorithms to organize search results into thematic folders. User interfaces Web Search Clustering organizes search results from public...LAST
By Archana Malhotra 3650 days agohttp://last.cbrc.jp/ - LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with...gVolante: Completeness Assessment of Genome/Transcriptome Sequences
By Jit 2405 days agogvolante.riken.jp - gVolante provides an online interface for completeness assessment of user’s original or publicly available sequence datasets as well as for browsing results of completeness assessment performed on publicly available genome and...KAST: Perform Alignment-free k-tuple frequency comparisons from sequences
By Jit 2725 days agogithub.com - Perform Alignment-free k-tuple frequency comparisons from sequences. This can be in the form of two input files (e.g. a reference and a query) or a single file for pairwise comparisons to be made.SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
By Jit 2642 days agolbbe.univ-lyon1.fr - The software package SiLiX implements an ultra-efficient algorithm for the clustering of homologous sequences, based on single transitive links (single linkage) with alignment coverage constraints. SiLiX adopts a graph-theoretical framework to...Gepard: allows the calculation of dotplots even for large sequences like chromosomes or bacterial...
By Jit 2385 days agogithub.com - Gepard (German: "cheetah", Backronym for "GEnome PAir - Rapid Dotter") allows the calculation of dotplots even for large sequences like chromosomes or bacterial genomes. Reference: Krumsiek J, Arnold R, Rattei T. Gepard: A rapid and sensitive tool...Tiara: deep learning-based classification system for eukaryotic sequences
By Rahul Nayak 1454 days agoacademic.oup.com - With a large number of metagenomic datasets becoming available, eukaryotic metagenomics emerged as a new challenge. The proper classification of eukaryotic nuclear and organellar genomes is an essential step toward a better understanding of...LAST
By Bulbul 3365 days agohttp://last.cbrc.jp/ - LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA...GMASS: a novel measure for genomeassembly structural similarity
By Abhimanyu Singh 2519 days agobioinfo.konkuk.ac.kr - The GMASS score is a novel measure for representing structural similarity between two assemblies. It will contribute to the understanding of assembly output and developing de novo...Recombination detection tool
By Jit 3686 days ago Comments (2)github.com - A program to detect recombination hotspots using population genetic data. More at https://github.com/auton1/LDhot
