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R Package for PCA Analysis
By LEGE 231 days agorpubs.com - An R package for performing principal component analysis (PCA) of genomics data. The package performs PCA, generates the publication-ready plots, and identifies population-specific outlier individuals. The package can be accessed on...chromoMap-An R package for Interactive visualization and mapping of human chromosomes
By Rahul Nayak 2330 days ago Comments (1)An R package for Interactive visualization and mapping of human chromosomesGeneMates: an R package for Detecting Horizontal Gene Co-transfer between Bacteria Using Gene-gene...
By Rahul Nayak 1709 days agogithub.com - GeneMates is an R package implementing a network approach to identify horizontal gene co-transfer (HGcoT) between bacteria using whole-genome sequencing (WGS) data. It is particularly useful for investigating intra-species HGcoT, where...DECIPHER; a software toolset for deciphering and managing biological sequences efficiently using...
By BioStar 2163 days agowww2.decipher.codes - DECIPHER is a software toolset that can be used for deciphering and managing biological sequences efficiently using the R programming language. The R package is distributed as platform independent source code under the GPL...Trelliscope: flexibly visualize large, complex data in great detail from within the R statistical...
By Jit 1755 days agodeltarho.org - Trelliscope provides a way to flexibly visualize large, complex data in great detail from within the R statistical programming environment. Trelliscope is a component in the DeltaRho environment. For those familiar with Trellis...CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
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By Jit 2362 days agogithub.com - pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file...RopeBWT2: Incremental construction of FM-index for DNA sequences
By Rahul Nayak 2209 days agogithub.com - RopeBWT2 is an tool for constructing the FM-index for a collection of DNA sequences. It works by incrementally inserting one or multiple sequences into an existing pseudo-BWT position by position, starting from the end of the sequences. This...Common methods to discover tandem repeats
By BioStar 613 days agoTandem repeats are DNA sequences that are repeated in a contiguous manner in the genome.Basics of BLAST Programs !
By BioStar 107 days agoThe Basic Local Alignment Search Tool (BLAST) is a powerful bioinformatics program used to compare an input sequence (such as DNA, RNA, or protein sequences) against a database of sequences to find regions of similarity.
