Our Sponsors
Related items
Gepard: allows the calculation of dotplots even for large sequences like chromosomes or bacterial...
By Jit 2536 days agogithub.com - Gepard (German: "cheetah", Backronym for "GEnome PAir - Rapid Dotter") allows the calculation of dotplots even for large sequences like chromosomes or bacterial genomes. Reference: Krumsiek J, Arnold R, Rattei T. Gepard: A rapid and sensitive tool...Steps to find palindrome in genomes !
By BioStar 1245 days agoPalindromes are sequences of nucleotides that read the same backward as forward.TGNet
By Shruti Paniwala 3633 days agogithub.com - Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo assemblies consist in many pieces of contiguous sequence (contigs) arranged in thousands of scaffolds instead of small numbers of...J-Circos
By Shruti Paniwala 3456 days agowww.australianprostatecentre.org - Circos plot tool (J-Circos) that is an interactive visualization tool that can plot Circos figures, as well as being able to dynamically add data to the figure, and providing information for specific data points using mouse hover display and zoom...U-Plot: Genome U-Plot sample implementation
By Rahul Nayak 2346 days agogithub.com - The Genome U-Plot is a JavaScript tool to visualize Chromosomal abnormalities in the Human Genome using a U-shape layout.genomenotebook
By Abhi 1203 days agodbikard.github.io - https://dbikard.github.io/genomenotebook/ Install pip install genomenotebook How to use Create a simple genome browser with a search bar. The sequence appears when zooming in. import genomenotebook as gn g=gn.GenomeBrowser(genome_path,...Kraken: ultrafast metagenomic sequence classification using exact alignments
By Jit 3691 days ago Comments (1)www.ncbi.nlm.nih.gov - Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have been relatively slow and computationally expensive, forcing researchers to use faster...BLAST options, setting and defaults
By Jit 2795 days agowww.arabidopsis.org - BLAST stands for Basic Local Alignment Search Tool and was developed by Altschul et al. (1990) and significantly improved by Altschul et al. (1997). It is a very fast search algorithm that is used to separately search protein or DNA...
Is reference genome necessary for gene expression study in transcriptome sequencing or for variant discovery in genome sequencing?
Rahul Agarwal 4767 days agoCancer's origins revealed
By Jitendra Narayan 4738 days agoResearchers discover the genetic imprints and signatures left by DNA-damaging processes that lead to cancer.
