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Bioinformatics tools developed for Oxford Nanopore data analysis !
By biogeek 2548 days ago Comments (2)One of the technical advantages of ONT data is the read length, which offers great prospects for genome assembly.Troyanskaya Lab
The goal of our research is to interpret and distill this complexity through accurate analysis and modeling of molecular pathways, particularly those in which malfunctions lead to the manifestation of disease. We are inventing integrative methods...SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
By BioStar 1585 days agogithub.com - SHAMAN is a shiny application for differential analysis of metagenomic data (16S, 18S, 23S, 28S, ITS and WGS) including bioinformatics treatment of raw reads for targeted metagenomics, statistical analysis and results visualization with a large...RNA-seq workflow: gene-level exploratory analysis and differential expression
By Jit 1167 days agomaster.bioconductor.org - Here we walk through an end-to-end gene-level RNA-seq differential expression workflow using Bioconductor packages. We will start from the FASTQ files, show how these were quantified to the reference transcripts, and prepare gene-level count...Exploring RNA Sequence Analysis: Tools for Every Bioinformatician
By Neel 6 days agoThe bioinformatics landscape for RNA sequence analysis is vast, with tools catering to specific needs. Whether you’re studying coding RNAs, non-coding RNAs, or exploring RNA-protein interactions, the right tools can transform your data into...Amity University Bioinformatics Summer Program - Kolkata
By eliabrodsky 2017 days agoRegistrations are now open for the 2019 Summer Bioinformatics Training program at Amity University, Kolkata.Bpipe - a tool for running and managing bioinformatics pipelines
By Radha Agarkar 3133 days agohttp://docs.bpipe.org/ - Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - known as 'pipelines'. January 20th, 2016 - New! Bpipe 0.9.9 released! Download latest, all Documentation Mailing List (Google...MetaPred2CS
By Manisha Mishra 2848 days agogithub.com - MetaPred2CS Web server is a meta-predictor based on Support Vector Machine (SVM) that combines 6 individual sequence based protein-protein interaction prediction methods to predict prokaryotic two-component...Anvio
By Shruti Paniwala 3107 days agogithub.com - In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the methods paper here: https://peerj.com/articles/1319/ Anvi’o would not have been possible without the help of many people who...Genome Workbench 2.10.7
By Gudiya Pal 3092 days agoGenome Workbench 2.10.7 is here! New features include added support for local custom BLAST databases and improvements to Tree View.
