Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is a collectio...nce blocks, regardless of whether it encompasses multiple genes, an area containing single genes,...2637 days ago
The 5 reasons to mistakes at bioinformatics work !!!
When you're just starting out with biological programming, it's easy to run into complex pr...t out at end check out and clear your doubt even for a single err...they are no more than 95 percent complete. Sometime a single proble...2133 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets...1173 days ago
Download mutliple fasta file from NCBI in one GO!!
if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click...3937 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha helical memb...lipid-exposed faces of the TM domains. Results: In a cross validated test on single sequen...3972 days ago
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Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing the GridION...ience, security/defence and more. The platform technology uses nanopores to analyse single molecu...3840 days ago
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Find certain files/documents in Linux OS
As bioinformatician I know the fact that we usually handle the large dataset and lost in the huge numbers of...ind / -type d -perm 777 -print -exec chmod 755 {} \;17. Find and remove single FileTo find a single file c...3708 days ago
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High Density Sheep SNP Genotyping Chip released!!!
...CSIRO, and the USDA as part of the International Sheep Genomics Consortium. It features over 54,241 evenly spaced probes that target single nucleotide polymorphisms (SNPs). More than 18,000 of t...3924 days ago
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Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 labor...aptation. The successful candidate will be in charge of the detection of polymorphisms including structural variants...3976 days ago
Ph.D. Fellowship (Computational Biology/Bioinformatics) : Cork, Ireland : Cork, Ireland
Ph.D. Fellowship (18,000 euro/pa, plus tuition fees at the EU students rate) is available for four years to work on...mapping positions of the ribosomes on the whole transcriptome level with a nucleotide pr...3943 days ago
The Laboratoire de genomique fonctionelle
One persistent challenge of post genome biology remains the determination of the functions...genes. In mammals this task is formidable given that a single gen...alternative pre-mRNA splicing. Protein isoforms from a single gene c...3975 days ago
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Flu Attack! How A Virus Invades Your Body
When you get the flu, viruses turn your cells into tiny factories that help spread the disease...rt Krulwich and medical animator David Bolinsky explain how a flu virus can trick a single cell i...3936 days ago
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has mor...= x['accession'] print("downloading", nm) dna = Entrez.efetch(db='nucleotide',i...1163 days ago
Download genome using NCBI esearch command line !
#Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -q...1128 days ago
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Bi...of the tools. Considering this, if the field carries on developing like this, every single resear...2389 days ago
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Comment on "List of popular bioinformatics software/tools"
A program for annotating and predicting the effects of single nucleotide polymorphisms (SNP) http://snpeff.sourceforge.net/ http://snpeff.sourceforge.net/SnpEff_paper.pdf3598 days ago