459 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...ecies: Select the species that you want to compare based on their evolutionary relationship or biological interest. Obtain the genome sequences: Download the genome sequences of the s...467 days ago
Comment on "BBTools for bioinformatician !"
Latest download link at https://sourceforge.net/projects/bbmap/files/BBMap_38.94.tar.gz More at https://sourceforge.net/projects/bbmap/files/961 days ago
Comment on "Sibelia: A comparative genomics tool"
...les for generating such diagram are written in directory "circos" inside the output directory. To generate "Circos" diagram do following: 1. Download and install "Circos" software...1328 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
..., as well as 8 threads. Finally, clean up you working directory by removing the combined fasta file, and re-zipping any unzipped files. Then download the output files to you compu...1381 days ago
Comment on "NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore"
wget https://github.com/philres/ngmlr/releases/download/v0.2.7/ngmlr-0.2.7-linux-x86_64.tar.gz--2020-02-03 11:05:58-- https://github.com/philres/ngmlr/releases/download/v0.2.7/ngmlr-0.2.7-linux-x86_...1597 days ago
Comment on "Bioinformatics Jokes !!"
Someone ask a bioinformatician how to open the "Jar"? He suggested to download and install Java first. ;)1954 days ago
2083 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
...t say Y and accept defaults. We need to download poRe from sour...nbsp;and we are using version 0.16 Once downloaded, and back at the Linux comm...cripts/old_format/extract2D MAP006-1/MAP006-1_downloads/pass/ > minion.pass.2D.fa...2218 days ago
Comment on "Download assemblies from NCBI"
User can also download with script http://bioinformaticsonline.com/snippets/view/33321/download-the-genome-from-ncbi-using-bash-scriptcommand2573 days ago