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List of gene ontology software and tools
...ne products with terms from the Gene Ontology. http://goat.man.ac.uk/ Script https://github.com/tanghaibao...urated database of human protein-protein, protein-DNA interactions, transcription factors, signaling and met...3751 days ago
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Download mutliple fasta file from NCBI in one GO!!
...tract/download all fasta sequences in single click given that you already have a list of GIs or accession IDs . Alternatively, use one liner perl script: perl -ne 'if(/^>(\S+)/){...3952 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3910 days ago
3908 days ago
Clump Finding Problem Solved with Perl
The question at http://rosalind.info/problems/1d/ Script are moved to http://bioinformaticsonline.com/snippets/view/34633/clump-finding-problem-solved-with-perl2376 days ago
Genome Assembly Tools and Software - PART2 !!
...emblyStage1: Perfectly aligns TranscriptSimulator reads to their nucle...ion Approach to RNA-Seq Based Transcriptome AssemblyIsoLasso is a...Oases 0.2.08 – De novo Transcriptome Assembler for very short r...Assembly of Roche-454/Sanger Transcriptome SequencesiAssembler i...2727 days ago
3989 days ago
Most Commonly used Awk by Bioinformatician
...f 'stuff | grep | sed | cut...' with a single call to awk. For a simple script, most of the timelag is in lo...or some quick job in the terminal, or build an awk section into a shell script. You can find a lot of online...3954 days ago
BLAST nr version 5 database, (nr_v5)
...ftp.ncbi.nlm.nih.gov/blast/db/v5/ For BLAST+ there is a cleanup script to help you manage the transition to this smaller database. The script removes unused database volum...1759 days ago
NCBIBLAST+ 2.14.1 now available
...changes they made. They added the cleanup-blastdb-volumes.py script to remove unused BLAST databa...hen downloading data from the NCBI with the update_blastdb.pl script. And fixed a few bugs relate...291 days ago
Structural polymorphism analysis from NGS data
...://transplantdb.eu, AMAIZING http://www.amaizing.fr/). The position requires a doctoral degree (PhD) in bioinformatics with strong expertise in script writing (Python/Perl) and pip...3990 days ago
Senior Bioinformatics Programmer and SRF at BIOTECH PARK Lucknow
...es, maintenance of website, Drug designing and QSAR study etc. c) Desirable Knowledge of Bioinformatics tools, Windows, Linux, C++, JAVA / JAVA Script, Visual Basic, CGI, DBMS/RDBM...3950 days ago
The Best Bioinformatics / Computational Biology Quotes
...d; call it version 1.0 The glass is neither half-full nor half-empty: it's actually have several genomes. I'm BioGeek. Fedup with LIPS, try God script. Idiot, Go ahead, make my da...3762 days ago
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Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has more (1200?), but they require you to sign up import...1178 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #Parse command...1143 days ago
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Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...install cpanminus Install BioPerl by entering the following command: cpanm BioPerl Verify the installation by running a BioPerl script or entering the following com...464 days ago
Comment on "Perl Module Installation"
...install cpanminus Install BioPerl by entering the following command: cpanm BioPerl Verify the installation by running a BioPerl script or entering the following com...464 days ago