Software and Tools to detect structure variation with long reads !!
...tion between genetics and heritable diseases requires an approach that looks at all the variant bases and types in a genome. While a PacBio de novo assembly resolves the mo...2650 days ago
String graph based genome assembly software and tools !
...embly of GEnomes https://github.com/lucian-ilie/SAGE2 SAGE, for de novo genome assembly. As opposed t...olding. 5. Fermi https://github.com/lh3/fermi/ Fermi is a de novo assembler with a particular f...2371 days ago
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3953 days ago
Next Generation Sequencing (NGS) Tutorials
...idPKLxM Variant Detection Introductory tutorial https://docs.google.com/document/pub?id=1ZRzrjjOCvtAu3m-IKL-rbJ1f4On60dDL_IEwG7oejdI Microbial de novo Assembly for Illumina Data In...3530 days ago
Evaluation of genome assembly software based on long reads
TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial geno...re: Celera Assembler , Falcon , Miniasm, Newbler , SGA Assembler, Smartdenovo, Abruijn, Ra, DBG2OLC, Spades...1963 days ago
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Want to Know which genome assembler rule the world ?
Assemblathon 2: evaluating de novo methods of genome assembly http://www.gigasciencejournal.com/content/2/1/10/abstract http://blogs.nature.com/news/2013/07/genome-assembly-c...3963 days ago
Genome Assembly Tools and Software - PART2 !!
...e that GeneStitch support is SOAPdenovo. RACA 0.9.1.1 – Refere...ent reads. SeqCons 1.0 – de novo and reference-guided Sequence...new string-overlap graph-based de novo genome assembler. Omega 1.0....emblies. Fermi 1.1 – WGS de novo Assembler based on the FMD-in...2728 days ago
Awesome perl frameworks, libraries and software - PART 4
...th signatures, no source filter yogan/cope - A colourful wrapper for terminal programs trinityrnaseq/trinityrnaseq - Trinity RNA-Seq de novo transcriptome assembly tokuh...2537 days ago
Bioinformatics Companies in India
...o Park, Basavangudi, Bangalore – 4www.molecularconnections.com 22.Novo Informatics Pvt. Ltd.TBIU, 2n...lhi-16.Contact: 91-11-26581524, 91-11-26581766(Extension: 28)Email: info@novoinformatics.comwww.novoinforma...3968 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...t al., Bioinformatics 27(13):i137-41, 2011. PubMedCentral De novo assembly Velvet: algorithms for de novo short read assembly using de...Full Text Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping...3822 days ago
Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
...r cost. The availability of hundreds of genomes in a short time is expected to revolutionize area of life sciences. A number of new methods like de-novo sequencing, resequencing, tra...3888 days ago
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JRF in Bioinformatics @ Bioinformatics Centre, North-Eastern Hill University
Applications with complete bio-data are invited for JRF (3) and Project Assistant (1) in a DBT project "Next Generation Sequencing (NGS)-based de novo assembly of expressed transcrip...3511 days ago
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Pack a perl program with their dependencies on Ubuntu !
...BioStar 409 days ago Evaluationgenomeassemblysoftwarelongreads TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of mic...1554 days ago
Which of the following programming language is best for a bioinformatics beginner?
...arch work and I will like to learn a programming language which is compatible with most bioinformatics tools or software. I basically want to do de-novo assembly, map reads, align re...3573 days ago
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