Tools to detect synteny blocks regions among multiple genomes
...er can be used for finding regions syntenic across multiple genomes and measuring the extent of genome rearrangement using reversal distance as a measure. OrthoCluster (http://krono....2643 days ago
List of motif discovery tools !
...Tp -- computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues Identify and measure surface accessible pockets as...2026 days ago
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Awesome perl frameworks, libraries and software - PART 3
...l - RPerl Compiler petdance/bobby-tables - bobby-tables.com, the site for preventing SQL injections pshved/timeout - A script to measure and limit CPU time and memory...2527 days ago
List of In-silico Binding Site Prediction Tools
...voids buried in the interior of proteins. The measurement includes the area and vol...unbound split characteristic through the RMSD measurement. Furthermore, we conduct....bii.a-star.edu.sg/tankp/run_depth.html Depth measures the closest distance of a re...3777 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...does not use population labels or genome-wide measures; designed to represent varia...carrying variant based on family’s raw measurements; accommodates de novo mu...ter SNP ID (rsID), choose population, region, measure for LD, threshold plot format...2942 days ago
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Tadpole is 250x faster than SPADes assembler !
...optionally perform error correction. correct: Error correct only. insert: Measure insert sizes....1009 days ago
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Comment on "Benchmarking Perl Module !"
...Perl Benchmark module, which provides a simple and standardized way to measure and compare the performance o...module. The Benchmark module provides a simple and standardized way to measure and compare the performance o...448 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
Benchmark (or "High-confidence") variant calls and regions:We developed an integration pipeline to utilize sequencing data generated by multiple technologies to generat...1593 days ago