HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures
The HNADOCK server is to predict the binding complex structure between two nucleic acid molecules through a hierarchical docki...tions. Users are required to provide the three-dimensional (3D) structures of the two molecules to be d...1470 days ago
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RNA-Bloom: a fast and memory-efficient de novo transcript sequence assembler
RNA-Bloom is a fast and memory-efficient de novo transcript sequence assembler. It...following sequencing data types: single-end/paired-end bulk RNA-seq (strand-specific/agnostic) paired-end single-cell RNA-seq (...1435 days ago
SEASTAR: Systematic Evaluation of Alternative STArt site in RNA
SEASTAR (Systematic Evaluation of Alternative STArt site in RNA) is a software package for Transcription Start Site (TSS) identification and quantification using only RNA-seq d...1400 days ago
proActiv: Estimation of Promoter Activity from RNA-Seq data
proActiv is an R package that estimates promoter activity from RNA-Seq data. proActiv uses aligned reads and genome annotations as input,...s output. The package can be used to identify active promoters and alternative p...1400 days ago
RosettaAntibodyDesign (RAbD): A general framework for computational antibody design
RosettaAntibodyDesign (RAbD) is a generalized framework for the design of ant...eir project needs. The algorithm is meant to sample the diverse sequence, structure, and binding space of an anti...1362 days ago
Caretta – A multiple protein structure alignment and feature extraction suite
Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for hom...cation and additionally outputs an aligned structure feature matrix for a given se...1273 days ago
Applied Computational Genomics Course at UU: Spring 2020
...e analysis and interpretation of experimental genomics data. It will be structured as a series of lecture...tification of genetic variation, structural variation, and ChIP-seq and RNA-seq analysis. Students will learn a...1268 days ago
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