Calling variants in non-diploid systems
The main challenge associated with non-diploid variant calling is the difficulty in distinguishing between the se...rly attempts to do this well have been accomplished on human mitochondrial DNA&n...1086 days ago
Kmer: a suite of tools for DNA sequence analysis
More at https://help.rc.ufl.edu/doc/Kmer This also includes: A2Amapper: ATAC, Assembly to Assembly Compa...wo different genomes (cross species). Sim4db: Spliced alignment of cDNA a...1033 days ago
1033 days ago
k-mers tutorial - classification and taxonomy
DNA k-mers underlie much of our assembly work, and we (along with many others!) have spent a lot of time thinking about how to store k-mer graphs efficiently,&nbs...1025 days ago
oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation
Gaussian Network Model (GNM) is a powerful tool to sample conformational dynamics based on contact topology in a...tallography, a protein in homo-/hetero-dimers, a part of a protein complex, the DNA i...881 days ago
odgi: optimized dynamic genome/graph implementation
odgi provides an efficient and succinct dynamic DNA sequence graph model, as well as a host of algorithms that allow the use of such graphs in bioinformatic analyses. Carefu...865 days ago
835 days ago
711 days ago
Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome
LOCUS ON563414 197205 bp DNA linear VRL 30-MAY-2022 DEFINITION Monkeypox virus isolate MPXV_USA_...ox virus (monkeypox) ORGANISM Monkeypox virus Viruses; Varidnavi...691 days ago
Metabuli 분리 improves metagenomic read classification
Metabuli 분리 improves metagenomic read classification through metamers, DNA-AA k-mers, to be sensitive and specific, recovering 99% and 98% of DNA or AA classifiers. M...agenomic classifier that jointly analyze both DNA a...378 days ago