Calling variants in non-diploid systems
The main challenge associated with non-diploid variant calling is the difficulty in dist...ly attempts to do this well have been accomplished on human mitochondrial DNA although the same approa...1092 days ago
Kmer: a suite of tools for DNA sequence analysis
More at https://help.rc.ufl.edu/doc/Kmer This also includes: A2Amapper: ATAC, A...o different genomes (cross species). Sim4db: Spliced alignment of cDNA and genomic sequences, from t...1040 days ago
1040 days ago
k-mers tutorial - classification and taxonomy
DNA k-mers underlie much of our assembly work, and we (along with many others!) have spent a lot of time thinking about how to store k-mer graphs efficiently,&nb...1031 days ago
oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation
Gaussian Network Model (GNM) is a powerful tool to sample conformational dynamics based...allography, a protein in homo-/hetero-dimers, a part of a protein complex, the DNA in complexed with transcripti...888 days ago
odgi: optimized dynamic genome/graph implementation
odgi provides an efficient and succinct dynamic DNA sequence graph model, as well as a host of algorithms that allow the use of such graphs in bioinformatic analyses. Careful encoding of...872 days ago
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Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome
LOCUS ON563414 197205 bp DNA linear VRL 30-MAY-2022 DEFINITION Monkeypox virus isolate MP...s (monkeypox) ORGANISM Monkeypox virus Viruses; Varidnaviria; Bamfordvirae; Nucleocyt...698 days ago