1258 days ago
oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation
...y x-ray crystallography, a protein in homo-/hetero-dimers, a part of a protein complex, the DNA in complexed with transcription factors, or even a large ligand (or ligands) in a prot...890 days ago
873 days ago
Tiara: deep learning-based classification system for eukaryotic sequences
With a large number of metagenomic datasets becoming available, eukaryotic metagenomics emerged as a new challenge. The proper classification of eukaryotic nuclear and organellar genomes is an essential step toward a better understanding of eukaryotic diversity.833 days ago
PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index
...time, space and accuracy tradeoffs made by different alignment tools and provides a promising foundation on which to test new alignment ideas over large collections of sequences.796 days ago
Quip: Aggressive compression of FASTQ, SAM and BAM files.
...-generation sequencing data with extreme prejudice. It supports input and output in the FASTQ and SAM/BAM formats, compressing large datasets to as little as 15%...763 days ago
657 days ago
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145 days ago
bacLIFE: an automated genome mining tool for identification of lifestyle associated genes
bacLIFE is a streamlined computational workflow that annotates bacterial genomes and performs large-scale comparative genomics to predict bacterial lifestyles and to pinpoint candida...102 days ago