Results for "structures"
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bpRNA: large-scale automated annotation and analysis of RNA secondary structure
bpRNA, a novel annotation tool capable of parsing RNA structures, including complex pseudoknot-containing RNAs, to yield an objective, precise, compact, unambiguous, easily-interpretabl...2202 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
...fitted in time and space efficiency by a revolution in the basic data structures and algorithms used.The core algorithms and the indexing data structures (2way-BWT) are developed by t...2202 days ago
CBS Comparative Microbial Genomics group - BioTools download page
...genera. The analyses include 16S rRNA phylogeny, basic DNA and codon statistics, proteome comparisons using BLAST and graphical analyses of DNA structures. Paper: http://jo...2110 days ago
STRUM: structure-based prediction of protein stability changes upon single-point mutation
...helps enhance the robustness and accuracy of the method and make it applicable to various protein seqences, including those without experimental structures2092 days ago
GenomeThreader: Gene Prediction Software
...ructure predictions are calculated using a similarity-based approach where additional cDNA/EST and/or protein sequences are used to predict gene structures via spliced alignments. ...2068 days ago
- Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of: nodes, which...
1587 days ago
HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures
...global search strategy and an intrinsic scoring function for nucleic acid interactions. Users are required to provide the three-dimensional (3D) structures of the two molecules to be do...1458 days ago
Caretta – A multiple protein structure alignment and feature extraction suite
...Caretta is available as a GUI and command-line application and additionally outputs an aligned structure feature matrix for a given set of input structures, which can readily be used in...1262 days ago
oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation
...onsider protein dynamics in the presence of ‘environment’ (1). The ‘environment’ here can be crystal contacts defined in structures solved by x-ray crystallograp...867 days ago
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