Results for "dRAD and ddRAD sequencing"
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The ENCODE project uses Reference Genomes from NCBI or U...framework for mapping high-throughput sequencing data. In general,...onsistently to 2 human (GRCH38, hg19) and 2...ments are mapped to either dm3 or dm6 and Caenorhabdilis elegans exp...1021 days ago
- fastv is an ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. It detects microbial sequenc...s from FASTQ data, generates JSON reports and v...ts both short reads (Illumina, BGI, etc.) and long reads (ONT, PacBio, etc.)
934 days ago
UniqueKmer: Generate unique KMERs for every contig in a FASTA file
Generate unique k-mers for every contig in a FASTA file. Unique k-me...any other contigs (for both forward and reverse strands). This tool accepts the inp...h is an ultra-fast tool to identify and visualize microbial sequences from sequencing data. https://github.com/Ope...929 days ago
- compare two BWA mapping methods with the onli...mapping obtained with their GA IIx deep sequencing platform <ftp://webdata:webdata@ussd-ftp.illumina.com/Data/SequencingRuns/NA18507_GAIIx_100_chr21.b...
895 days ago
Smudgeplot: Inference of ploidy and heterozygosity structure using whole genome sequencing data
This tool extracts heterozygous kmer pairs from kmer count databases and performs gymnastics with them. We are able to d..., etc. Smudgeplots are computed from raw or even better from trimmed reads and show t...859 days ago
- A lesson introducing the Snakemake workflow system for bioinform...This is an intermediate lesson and assumes learners have already...Familiarity with the BASH command shell, including concepts lik...file format and transcriptome sequencing, in order to understand the example workflow. No previous...
786 days ago
Quip: Aggressive compression of FASTQ, SAM and BAM files.
This will help us to reduce the amount of drive space we take up and decrease data transfer times Quip compresses next-generation seque...ata with extreme prejudice. It supports input and output in the FASTQ and&nb...771 days ago
Choosing the Right NGS Sequencing Instrument for Your Study
The right sequencing instrument for your study depends on your p...Setting aside turnaround time and price, it essentially comes down to the numbers of reads and r...squo;re new to high-throughput sequencing and have questions about how you should design your sequencing run, fill out our free c...749 days ago
HairSplitter: assembling long reads in an unknown number of haplotypes
Pros and cons of HairSplitter Limitations of HairSplitter: Not very...HairSplitter can recover haplotypes and distinguish repeated elements Only needs seque...HairSplitter can recover haplotypes and distinguish repeated elements Only needs sequencing reads, potentially error-pron...574 days ago
- The bioinformatics chat is a podcast about computational biology, bioinformatics, and next generation sequencing. The bioinformatics chat is produced by Roman Cheplyaka and hosted by Roman and Jacob Schreiber.
477 days ago
