QuasiModo - Quasispecies Metric Determination on Omics
...his tool can also be used to evaluate assemblies and variant calling results on other similar datasets. https://academic.oup.com/bib/article/22/3/bbaa123/58680701095 days ago
WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events.
...entify LGTs from sequenced isolate genomes, identifying LGTs from community metagenomes remains an open problem. To address this, we developed WAAFLE: a Workflow to A...1006 days ago
928 days ago
Refseq viraal genome sequences !
List of all viruses on NCBI https://ftp.ncbi.nlm.nih.gov/refseq/release/viral/928 days ago
UniqueKmer: Generate unique KMERs for every contig in a FASTA file
Generate unique k-mers for every contig in a FASTA file. Unique k-mer is consisted of k-mer keys (i.e. ATCGATCCTTAAGG) that are only presented in one contig, but not presented in a...922 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), a...901 days ago
845 days ago
CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation
...recall. Please note that the CrowdGO snakemake workflow is currently only tested on Ubuntu. It should work on OSX, but please report any errors to maarten.reijnders@unil.ch or crea...762 days ago
555 days ago
Metabuli 분리 improves metagenomic read classification
...lassification through metamers, DNA-AA k-mers, to be sensitive and s...c, recovering 99% and 98% of DNA or AA classifiers. Metabul...ly analyze both DNA and amino acid (AA) sequences. DNA-based classif...leverageing higher conservation of AA sequences. Metabuli combines...388 days ago