Qualimap2: Evaluating next generation sequencing alignment data
...te the quality control of alignment sequencing data and its derivatives like feature counts. Supported types of experiments include: Whole-genome sequencing Whole-exome seque...2125 days ago
funannotate: Eukaryotic Genome Annotation Pipeline
Funannotate is a genome prediction, annotation, and comparison sof...was originally written to annotate fungal genomes (small eukaryotes ~ 30 Mb genomes), but has evolved over time...us funannotate is aimed at simplifying the genome submission process.2117 days ago
2109 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide forward simulations of evolving populations. MimicrEE2 enables the convenient usage of available genomic resources, supports b...2107 days ago
2107 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene str...redict gene structures via spliced alignments. GenomeThreader was motivated by...e prediction program which is widely used for plant genome annotation.2102 days ago
2101 days ago
BASE: a practical de novo assembler for large genomes using long NGS reads
...classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the genome. Such seeds form the basis fo...2087 days ago
Wtdbg2: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore
...rrection and then builds the consensus from intermediate assembly output. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome at a speed tens of times fast...2086 days ago
2081 days ago