Ensembl Variation - Calculated variant consequences
For each variant that is mapped to the reference genome, we identify all overlapping Ensembl transcripts. We then use a rule-based approach to predict the effects that each allele o...2128 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
SeqMonk is a program to enable the visualisation and analysis of mapped sequence data....ualisation of mapped regions against an annotated genome. Flexible quantitation of th...interest Creation of reports containing data and genome annotat...2127 days ago
Qualimap2: Evaluating next generation sequencing alignment data
Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User I...s like feature counts. Supported types of experiments include: Whole-genome sequenc...2127 days ago
funannotate: Eukaryotic Genome Annotation Pipeline
Funannotate is a genome prediction, annotation, and comparison software package....It was originally written to annotate fungal genomes (small eukaryotes ~ 30 Mb genomes), but has evolved over time...thus funannotate is aimed at simplifying the genome submiss...2119 days ago
2111 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide forward simulations of evolving populations. MimicrEE2 enables the convenient usage of available genomic resources, suppor...2110 days ago
2110 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene...dict gene structures via spliced alignments. GenomeThreader was motivated by...prediction program which is widely used for plant genome annotat...2104 days ago
2103 days ago
BASE: a practical de novo assembler for large genomes using long NGS reads
new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the read...generate adaptive seeds that have high probability to appear uniquely in the genome. Such s...2089 days ago