Qualimap2: Evaluating next generation sequencing alignment data
...quality control of alignment sequencing data and its derivatives like feature counts. Supported types of experiments include: Whole-genome sequencing Whole-exome sequencing RNA-seq (spe...2122 days ago
funannotate: Eukaryotic Genome Annotation Pipeline
Funannotate is a genome prediction, annotation, and comparison sof...was originally written to annotate fungal genomes (small eukaryotes ~ 30 Mb genomes), but has evolved over time...us funannotate is aimed at simplifying the genome submission process.2114 days ago
2106 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide forward simulations of evolving populations. MimicrEE2 enables the convenient usage of available genomic resources, supports biologic...2105 days ago
2105 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene str...redict gene structures via spliced alignments. GenomeThreader was motivated by...e prediction program which is widely used for plant genome annotation.2099 days ago
2098 days ago
BASE: a practical de novo assembler for large genomes using long NGS reads
new de novo assembler called BASE. It enhances the classic seed-extension...o generate adaptive seeds that have high probability to appear uniquely in the genome. Such seeds form the basis fo...2084 days ago
Wtdbg2: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by Pa...tput. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome at a speed tens of times fast...2084 days ago
2078 days ago