SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
SeqMonk is a program to enable the visualisation and analysis of mapped sequence data....sualisation of mapped regions against an annotated genome. Flexible quantitation of th...interest Creation of reports containing data and genome...2122 days ago
Qualimap2: Evaluating next generation sequencing alignment data
Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Int...ves like feature counts. Supported types of experiments include: Whole-genome...2122 days ago
funannotate: Eukaryotic Genome Annotation Pipeline
Funannotate is a genome prediction, annotation, and comparison software package. It was originally written to annotate fungal genomes (small eukaryotes ~ 30 Mb genomes), but has evolved over time...thus funannotate is aimed at simplifying the genome...2114 days ago
2106 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide forward simulations of evolving populations. MimicrEE2 enables the convenient usage of available genomic resources, sup...2105 days ago
2105 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene...edict gene structures via spliced alignments. GenomeThreader was motivated by...prediction program which is widely used for plant genome...2099 days ago
2098 days ago
BASE: a practical de novo assembler for large genomes using long NGS reads
new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads...o generate adaptive seeds that have high probability to appear uniquely in the genome....2084 days ago
Wtdbg2: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technol...tput. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome...2084 days ago