2109 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide forward simulations of evolving populations. MimicrEE2 enables the convenient usage of available genomic resources, sup...2108 days ago
2108 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene...edict gene structures via spliced alignments. GenomeThreader was motivated by...prediction program which is widely used for plant genome...2103 days ago
2101 days ago
BASE: a practical de novo assembler for large genomes using long NGS reads
new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads...o generate adaptive seeds that have high probability to appear uniquely in the genome....2087 days ago
Wtdbg2: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technol...tput. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome...2087 days ago
2081 days ago
BAUM – Improving Genome Assembly by Adaptive Unique Mapping and Local Overlap-Layout-Consensus
BAUM, breaks the whole genome into regions by adaptive unique mapping; then the local OLC is used to assemble each...on in parallel. BAUM can: (1) perform reference-assisted assembly based on the genome...2081 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
Platypus is a tool designed for efficient and accurate variant-detection in high-t...l kb. It has been extensively tested on whole-genome, exon-capture, and ...n very large datasets as part of the Thousand Genomes...2081 days ago