Results for "formats"
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DnaSP: DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms
...s of DNA polymorphisms using data from a single locus (a multiple sequence aligned -MSA data), or from several loci (a Multiple-MSA data, such as formats generated by some assembler R...1309 days ago
Applied Computational Genomics Course at UU: Spring 2020
...identification of genetic variation, structural variation, and ChIP-seq and RNA-seq analysis. Students will learn and apply the fundamental data formats and analysis strategies that...1281 days ago
CoverM: Read coverage calculator for metagenomics
...help). Calculating coverage by read mapping, its input can either be BAM files sorted by reference, or raw reads and reference genomes in various formats.1154 days ago
Pandoc: a universal document converter
If you need to convert files from one markup format into another, pandoc is your swiss-army knife. Pandoc can convert almost all formats https://pandoc.org/index.html1099 days ago
ncbi-datasets-cli -- Quickstart: command line tools !
...gical sequence data across all domains of life from NCBI. Use dataformat to convert metadata from JSON Lines format to other formats. Conda download: https://an...932 days ago
- ...a custom ExAC VCF for annotation. Though the most useful feature is the extensive support in parsing a wide range of crappy MAF-like or VCF-like formats we've seen out in the wild....
922 days ago
CrossMap: program for genome coordinates conversion between different assemblies
...conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used file formats including BAM, CRAM...883 days ago
Quip: Aggressive compression of FASTQ, SAM and BAM files.
...Quip compresses next-generation sequencing data with extreme prejudice. It supports input and output in the FASTQ and SAM/BAM formats, compressing large datasets t...764 days ago
InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams
...e tool also allows obtaining subsets’ elements, saving and loading sets for further analyses, and exporting the diagram in vector and image formats. InteractiVenn has been used...728 days ago
ExRec: Exclusion of Recombined DNA
...ain program that conducts the four-gamete filtering procedures. The pipeline outputs recombination-filtered data in concatenated NEXUS and PHYLIP formats and a tab-delimited table con...91 days ago
