odgi: optimized dynamic genome/graph implementation
odgi provides an efficient and succinct dynamic DNA sequence graph model, as well as a host of algorithms that allow the use of such graphs in bioinformatic analyses. Careful e...887 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary name...887 days ago
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SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files
A general-purpose program to manipulate and parse information from FASTA/FASTQ files, supporting gz...and de-interleave FASTQ files, to rename sequences and to count and print statistics on sequence...860 days ago
857 days ago
The complete sequence of a human genome
The completed regions include all centromeric satellite arrays, recent segmental duplications, and the short arms of all five acrocentric chromosomes, unlocking these complex regions of the genome to variational and functional studies.829 days ago
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InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams
InteractiVenn, a more flexible tool for interacting with Ve...nterface for Venn diagram construction and enables analysis of set unions while preservin...lyze two biological datasets, but it may serve set analysis in a broad range of domains....740 days ago
Collection of Graph Visualization tools !
Standard approaches to genome inference and analysis relate sequences to a single linear reference genome. This is effici...are hard to observe and describe in a coherent way. Variation and sequence are separated. https...530 days ago