gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
gapFinisher to process SSPACE-LongRead output to fill gaps after the scaffolding. gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6733440/1480 days ago
wgd—simple command line tools for the analysis of ancient whole-genome duplications
wgd is a easy to use command-line tool for KS distribution construction named wgd. The wgd suite provides commonly used KS and colinearity analysis workflows toget...1410 days ago
1410 days ago
vsFilt: A tool to improve virtual screening by structural filtration of docking poses
The vsFilt is the first open application for post-docking s...s. The results are web-based and can be operated on-line using the built-in HTML5 inte...for a local use. The vsFilt is freely available on-line, no login required....1285 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
The algorithm presented herein, Mining Algorithm for GenetIc Contr...redicting TFs and cofactors that drive gene changes in 4 settings: 1) A cell line expressing or lacking single...1284 days ago
Caretta – A multiple protein structure alignment and feature extraction suite
...es which consistently returns accurate alignments with a higher coverage than current state-of-the-art tools. Caretta is available as a GUI and command-line application and additionally...1262 days ago
1243 days ago
Pandoc: The universal markup converter
Pandoc is a Haskell library for converting from one markup format to another, and a command-line tool that uses this library. Pandoc is a free and open-source document converter, widely used as a writing tool and as a basis for publishing workflows. More at https://pandoc.org/1231 days ago
Luigi: a Python package that helps you build complex pipelines of batch jobs.
...(3.6, 3.7, 3.8, 3.9 tested) package that helps you build complex pipelines of batch jobs. It handles depen...cy resolution, workflow management, visualization, handling failures, command line integration, and much more....1074 days ago
989 days ago