1235 days ago
1215 days ago
CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes
The pipeline can use information from scaffolded assemblies (for example from HiC or 10X Genomics), or even from diverged (~65-100 Mya) reference genomes for ordering...1180 days ago
1131 days ago
QuasR: Quantification and annotation of short reads in R
..., through the Rbowtie package, and HISAT2, through the Rhisat2 package). The package aims to cover the whole analysis workflow of typical high throughput sequencing experiments, sta...1024 days ago
Kmer: a suite of tools for DNA sequence analysis
...es). Sim4db: Spliced alignment of cDNA and genomic sequences, from the same (sim4) or related (sim4cc) species. Optimized for high-throughput batched alignment....1019 days ago
990 days ago
Fix rewritable error of ELGG !
...enerated by a rewrite rule can include a query string, or can lead to internal sub-processing, external request redirection, or internal proxy throughput. Further details, discussi...930 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), a...877 days ago
oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation
Gaussian Network Model (GNM) is a powerful tool to sample conformational dynamics based on contact topology in a coarse-grained presentation. Here we present a method...867 days ago