BIMA V3: an aligner customized for mate pair library sequencing
...ost NGS alignment programs. Large insert sizes, introduction of library preparation protocol artifacts (biotin junction reads, paired-end read contamination, chimeras, etc.), and presenc...2729 days ago
2648 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA s...rt sequence fragments. They revealed a number of probable bacterial contaminations as well as hybrid scaffolds...2386 days ago
2205 days ago
SKESA: strategic k-mer extension for scrupulous assemblies
...ina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produc...2030 days ago
1975 days ago
Predict Gene Ontology with sequences !
...karyotic proteomes in an hour. You can use AAI-profiler to summarize a proteome's species neighbors and reveal taxonomic identity or contamination. http://ekhidna2.biocenter.h...1428 days ago
1392 days ago
1380 days ago
OMArk: software for proteome (protein-coding gene repertoire) quality assessment
...proteome completeness, characterizes the consistency of all protein coding genes with regard to their homologs, and identifies the presence of contamination from other species. OMArk rel...104 days ago