3957 days ago
3854 days ago
Tools to detect synteny blocks regions among multiple genomes
...ether it encompasses multiple genes, an area containing single g...define synteny as “Two genes which occur on the same chro...ertain evolutionary important genes play an important role in ev...s conservation of large-scale gene order between species pairs....2650 days ago
List of gene ontology software and tools
The Gene Ontology (GO) is a set of ass...iological phrases to specific genes that are either chosen by trained curators or generated automatically. GO is des...St retrieves most significant Gene Ontology (GO) terms, KEGG and...archers, in the annotation of gene products with terms from the...3750 days ago
3985 days ago
Should you get sequenced? Not all bad genes predict disease
...l or potentially harmful” “As we roll out genomic medicine we are fighting against this society-wide misconception that having the bad gene means you’re going to g...3942 days ago
3601 days ago
864 days ago
3985 days ago
Bio++ : C Language libraries for your biological need
...braries for Bioinformatics, including sequence analysis,phylogenetics, molecular evolution and population genetics.Bio++ is designed in an e...ecomposition, LU decomposition, inversion, etc.Random number generation: Quick & Dirty (32b...3988 days ago
BioRuby :Ruby packages for biologist
...ent to twice or more lines of other languages because of Ruby's extremely high descriptive power. Classes for Multiple alignment (Bio::Alignment), Gene Ontology(Bio::GO), PDB (Bio::...3987 days ago
3987 days ago
3986 days ago
Lateral Gene Transfer Is Enriched in Cancer Samples
There has been always a confusion on cancer and bacteria relationship. This is the first paper which shows lateral gene transfer causes cancer. Find more at http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.10031073980 days ago
R package for visualising GO enrichment
...s of experimental data. This allows us to draw informative summary plots for analyses such as differential expression or clustering, where for each gene list we display its behaviour...3980 days ago
Structural polymorphism analysis from NGS data
...Saclay Scientific Cluster, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data a...al to establish a link between sequence variation, functional variation, gene/protein expression and phenot...3989 days ago
3989 days ago
The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @ http://www.imb.uq.edu.au/tim-bailey3988 days ago
3988 days ago
Bioinformatician become producer/director !!!
...T : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST k...ta le jayenge Raju ban gaya Genefinder. Har Ligand jo dock ka...ai. BLAST To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Databas...Haan Maine Bhi ClustalW Kiya Hai GeneScan Karke Dekho Alignment Ap...3959 days ago
3741 days ago
How Genes are Regulated: Transcription Factors
...ell types use it differently. Transcription Factors help influence which genes are used in which cell. Unde...better understand and model their binding to DNA and their regulation of gene expression. Scientific Direc...3935 days ago
DNA is packaged in a chromosome experiment
...tually form a chromosome; this both compacts DNA and creates an added layer of regulatory control, which ensures correct gene expression. Nucleosomes are thought to carry epigenetically inherited information...3917 days ago
Python script to download covid genome !
...seqs = seqs['genbank-sequences'] print("got %d sequences" % len(seqs)) from Bio import Entrez allseq = {} for x in seqs: if 'gene-region' in x and x['gene-region'] == "complete":...1176 days ago
Parse a genbank file using regular expressions
...print "Sequence name: $2\n"; } elsif (/(ORGANISM\s*)(.*)/) { print "Organism: $2\n"; } elsif(/(gene)(\s*)(\d*)(\.\.)(\d*)/) { print "Gene length: $5\n"; } elsi...2957 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...s a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology...g kit based on this profile. Alterations in the gene, transcript, protein, and met...n you will be retired, what would you tell next generation bioinformaticians?...2402 days ago
3983 days ago
3942 days ago
Tags: Bioinformatics, NearHGT, Horizontal, Gene, Transfer, Haifa
2914 days ago
GeneValidator - Identify problems with predicted genes
GeneValidator helps in identifing problems with gene predictions and provide useful information extracted from analysing orthologs in BLAST databases. The results produced can be used by biocurators and researchers who need accurate gene predictions. If you would like to use GeneValidator on a f...Tags: Bioinformatics, Analysis, NGS, Gene, Prediction, GeneValidator, Genome
2849 days ago
Comment on "Tools for Differential expression analysis"
...cs research that allows researchers to identify genes that are differentially expr...expression analysis of RNA-Seq data. It uses a generalized linear model to model...A-Seq data. It uses a linear model to model the gene expression data and provides...461 days ago
Comment on "Basic command-line to run BLAST"
...tches. This is useful for identifying the function of a newly discovered gene or for understanding the evol...d researchers make many important discoveries, including identifying new genes and understanding the geneti...461 days ago