How to install Perl modules manually, using CPAN command, and other quick ways
...p; | 2.4 MB 00:00Setting up Install ProcessParsing package install argumentsResolving DependenciesTransaction Summary==============================...3965 days ago
Tools to detect synteny blocks regions among multiple genomes
.../cookbooks/nikob/exercises/gf1_output_5.html), Ensembl 'SyntenyView' shows conservation of large-scale gene order between species pairs. A brief summary of the calculation method app...2625 days ago
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2947 days ago
Check the Size of a directory & Free disk space.
...the last line of the output. So if your directory occupies 30MB the last 2 lines of the output would be 30M.$ du -sUse this command to displays a summary of the directory size. It is...3718 days ago
A guide for complete R beginners :- Getting data into R
...(columns) are identified by their name #if any of these are typed it will print to screen mydata$A mydata$B mydata$C # Summary about the whole data frame summary(mydata) # Summary informat...3373 days ago
Apps for Busy Bioinformatics Researchers !!!
...al) system is used to identify all published molecular time estimates bearing on the divergence of two chosen organisms, such as species, compute summary statistics, and present the r...3557 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...PED, TPED, BED, Agilent files, NimbleGen data summary files, VCF files, Impute2 GWA...Data file, Map file (includes rsID) Output: Summary file, Best model file, dot fi...nvar_2014072 Input: VCF Output: TIMS score, summary table, PCA plot GSITIC...2924 days ago
R package for visualising GO enrichment
...ualizes the GO enrichment results as word clouds and arranges them together with figures of experimental data. This allows us to draw informative summary plots for analyses such as di...3955 days ago
3320 days ago
Postdoc position at Centre Méditerranéen de Médecine Moléculaire - Nice - France
...omedical research. Interested applicants should send a PDF with a cover letter stating research interests and qualifications, an updated CV, a summary of previous research experien...3638 days ago
Postdoc position at Centre Méditerranéen de Médecine Moléculaire
...biomedical research. Interested applicants should send a PDF with a cover letter stating research interests and qualifications, an updated CV, a summary of previous research experien...3606 days ago
Download the genome from NCBI using bash script/command
...# Look for genome assembly summary and extract the URL # USER need to provide the right summary file to curl # Commentline...genomes/refseq/fungi/assembly_summary.txt' | awk '{FS="\t"} !/^#/ {...vertebrate_mammalian/assembly_summary.txt' | awk '{FS="\t"} !/^#/ {...2547 days ago
Download the gff files from NCBI using bash script/command
...# Look for genome assembly summary and extract the URL # USER need to provide the right summary file to curl # Commentline...mes/genbank/bacteria/assembly_summary.txt' | awk '{FS="\t"} !/^#/ {.../refseq/invertebrate/assembly_summary.txt' | awk '{FS="\t"} !/^#/ {...2538 days ago
Tags: Sequence, Ontology, Bioinformatics, Analysis, SOBA, tool, statistical, graphical, summary, annotated, genome
1398 days ago
gfastats: The swiss army knife for genome assembly.
gfastats is a single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation. gfastats also allows seamless fasta<>fastq<>gfa[.gz] conversion. It has been tested in genomes even >...Tags: gfastats, summary, statistics, simultaneous, fasta, fastq, gfa
620 days ago
Comment on "Benchmarking Perl Module !"
...can also use other functions from the Benchmark module, such as cmpthese, to compare the performance of multiple modules or subroutines. In summary, benchmarking a Perl module i...431 days ago
Comment on "A quick guide to Phred scaling"
...he character code equal to the Phred score plus 33. For example, a Phred score of 20 is represented by the ASCII character "!" (33 + 20). In summary, Phred scaling is a logarithm...431 days ago