BBTools for bioinformatician !
...ith multiple threads, because the insert-size average is calculated on a per-thread...cally set "reads" to a level that will give X average coverage (decimal point is al...t=histogram.txt stats.txt will contain the average depth and percent covered of...2329 days ago
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3063 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
...DING:3) Remove trailing low quality or N bases (below quality 3) (TRAILING:3) Scan the read with a 4-base wide sliding window, cutting when the average quality per base drops below...3000 days ago
Bioinformatics approach to Boar Taint
...total of 47 samples belong to Norwegian Landrace (NL) and Duroc (D) pigs with varied boar taint levels were done in Illumina HiSeq2000 to >10X average coverage. Short reads generat...3847 days ago
India's own first drug - from Biocon.
Psoriasis is immune-mediated disease that effects the skin. the Disease on an average affects about 10-20 million Indians and it attacks the immune system of human beings. In generall...3978 days ago
Monitor running jobs on Linux server
...squo;top’.Now let’s read and understand at each line independently.The first line:top - 23:00:48 up 39 days, 2 user, load average: 0.00, 0.00, 0.00The first li...3679 days ago
Genome Assembly Tools and Software - PART2 !!
...Genome Sequence ErrorsAutoEditor is a tool for correcting sequencing and basecaller errors using sequence assembly and chromatogram data. On average AutoEditor corrects 80% of er...2744 days ago
4005 days ago
Most Commonly used Awk by Bioinformatician
...S="\t"}{print $2,$4,$5}' input.txt show rows between 20th and 80th: awk 'NR>=20&&NR<=80' input.txt > output.txt calculate the average of column 2: awk '{x+=$2}END...3970 days ago
Illumina reveals first dataset of long reads
With the help of Moleculo technology , acquired by Illumina releases new service for long reads sequencing i.e., FastTrack Long Reads. Average read length is around 8,500...3966 days ago
The 8000 years old Tibetian gene mutation !!!
...y has provided insight into how gene mutation around 8,000 years ago helped Tibetans' to survive in the thin air on the Tibetan Plateau, where an average elevation is of 14,800 feet.A...3604 days ago
Internships @ Indian Institute of Science
...mathematical or computational biology at institutions located in its region. Eligibility: Bachelors (3rd or 4th year) and Masters students Average duration: 3 months (could be...3803 days ago
3437 days ago
The Story of You: ENCODE and the human genome
...molecule that makes up our genomes: the DNA double helix. Then, in 2001, scientists wrote down the entire 3-billion letter code contained in the average human genome. Now they're try...3965 days ago
Microbiome - Making better use of bacteria
Bacterial cells outnumber human cells 10-to-1 in the average person. Bacterial genes outnumber human genes 100-to-1. Mayo Clinic and the Center for Individualized Medicine are working...3914 days ago
2092 days ago
Bash commandline to install Anaconda !
...s $ mkdir tmp $ cd tmp/ $ curl -O https://repo.anaconda.com/archive/Anaconda3-2019.03-Linux-x86_64.sh % Total % Received % Xferd Average Speed Time Time Time...1613 days ago
Comment on "Benchmarking Perl Module !"
...e the results: The timethese function will output the results of the benchmark, including the number of iterations, the total time taken, and the average time per iteration. You can u...473 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
Sequencing coverage is defined as the average number of reads that covers each base of the reference genome. Estimating the sequencing coverage is very important when y...641 days ago