Comment on "List of genome announcement, notes and reporting journals"
Computational and Structural Biotechnology Journal for bioinformatics tool publication1283 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments https://pubmed.ncbi.nlm.nih.gov/32463100/1301 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
IEEE Transactions on Knowledge and Data Engineering accepts bioinformatics and algorithms manuscripts https://www.computer.org/csdl/journal/tk1327 days ago
Comment on "URMAP, an ultra-fast read mapper"
...unpaired reads to a reference genome. The reference genome is stored as a UFI file cre...FASTA file for the reference is not needed. Reads must be in FA...ipe if needed). The reference genome index filename is given by...filename. Using /dev/stdout will not work because urmap attempts...1340 days ago
Comment on "Sibelia: A comparative genomics tool"
...al time and space and may be not appropriate in case of many...to place temporary files in another folder due to some reason...hey cover 3.82% of all four genomes, 6.59% of Seq 1 and 2.41%...D = 5 and somewhere in the genome we find: 1st pair: ......1342 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
... mugsy --directory /data/output --prefix mygenomes genome1.fasta genome2.fasta genome...during the run.The prefix of each input filename will be used as the genome name in the output files (e...1343 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...ed.fastq $ zcat reads_R2.fastq.gz >> combined.fastq We will now use kat comp to cr...bined reads and the assembly. Make sure that you use the flags for canonical hashes for both seq...1394 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...mbly.fasta> will tell you if everything’s ok! in this case, no output is good output, since...everal checks you can do after running Reapr (detailed here) but for now we’ll stick to looking...1394 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Biology Direct journals accept short notes/ application notes https://biologydirect.biomedcentral.com/submission-guidelines/aims-and-scope1399 days ago
Comment on "List of GOI approved peer reviewed bioinformatics and computational biology journals"
GENOMICS AND COMPUTATIONAL BIOLOGY https://genomicscomputbiol.org/ojs3/GCB/index1401 days ago