Results for "Genomes Analyses"
Blogs
In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research I used...ect designed to provide a visual means for simultaneously comparing genomes...3981 days ago
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ri...pped around on the respective genomes. Ovcharenko et. al. define it...f the two species) on several genomes. Figure: Image generated w...ions syntenic across multiple genomes and measuring the extent of g...2651 days ago
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Bookmarks
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days, easy to analyse the large...hms underlying the following fundamental topics in bioinformatics: assembling genomes,...
3986 days ago
Sequencing Solutions to World Health
"New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies3943 days ago
- +328 more Bookmarks
Files
- 1000 Genomes data tutorial at ASHG Structural variants presentation by Jan Korbel European Molecular Biology Laboratory (EMBL) Heidelberg Genome Biology Research Unit Reference: https://www.genome.gov/pages/research/der/1000genomesprojecttutorials/structuralvariants-jankorbel.pdf
2838 days ago
Evaluation of genome assembly software based on long reads
...emblies of hundreds of microbial genomes and highly contiguous reconst...many dozens of plant and animal genomes, enabling new insights into e...lso been applied to resequencing analyses, to create detailed maps of...as been performed on 4 reference genomes and the results evaluated with...1961 days ago
Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3986 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...reported for the assembly of genomes while the others are designed aiming at handling complex genomes. RMAP 2.1 – Short-re...rangement tool) takes several genomes and their relationships in a...nsisting of individuals viral genomes (also known as quasi-species)...2727 days ago
Awesome perl frameworks, libraries and software - PART 4
tjstein/php5-fpm-munin-plugins - A set of Munin plugins for PHP5-FPM perusio/nginx-munin - A set o...erprint gjospin/PhyloSift - Phylogenetic and taxonomic analysis for genomes and metagenomes...2535 days ago
Top-level pages
- ...xtensive electronic databases on genomes and protein sequences, and te...A represents a Turing Machine). Analyses in bioinformatics focus on t...ation in the comparison of whole genomes. Several methods detect glyco...rces of deseases. Many complete genomes of microorganisms and a few of...
3988 days ago
- ...concerned with sequencing the genomes of various organisms, but the...on material available on Net Genomes and genomics: Bioinformatics...e features and the results of analyses within the context of the seq...m for rapidly aligning entire genomes, whether in complete or draft...
3983 days ago
- +27 more Top-level pages
Wire posts
News
R package for visualising GO enrichment
An R package that visualizes the GO enrichment results as word clouds and arranges th...es of experimental data. This allows us to draw informative summary plots for analyses such as differential expressi...3981 days ago
100K Foodborne Pathogen Genome Project
The 100K Genome Project, led by the University of California, Davis, the U.S. Food and Drug Administration...iotechnology Information. 100K Genome Project, aims to sequence the genomes of 100,000 bacterial and viral genomes....3964 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laborat...ariants, of the comparison of multiple and diverse genomes of a same species and of the construction of pan- and core-genomes....3990 days ago
- van Noort Group is looking for PhD fellows We currently access an unprecedented knowledge on the basic component...llenge in the project will be to identify which of the many variants in these genomes...
3990 days ago
- +39 more Opportunity posts
ResearchLabs posts
- The human genome project and similar projects in disease-causing organisms such as Plasmodium falciparum, which cau...quence data in cancer Methods for analysis of structural variation in cancer genomes...
3989 days ago
- The IBL laboratory focuses on the multi-disciplinary analyses of the global responses of model microorganisms, cyanobacteria (mainly Synechocystis PCC6803) and yeasts (mainly Saccharomyces cerevi...
3960 days ago
- +18 more ResearchLabs posts
Fun
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just genome friendly. Bioinformatician would love to change the bio....0 The glass is neither half-full nor half-empty: it's actually have several genomes....3761 days ago
Video
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode all human DNA seque...ht of as words. Q. We're coming to understand the genomes of various organisms - not ju...used to analyze a genome is comparing it with the genomes...3958 days ago
Translational Bioinformatics: Transforming 300 Billion Points of Data
Translational Bioinformatics: Transforming 300 Billion Points of Data into Diagnostics, Therapeutics, and New Insig...of disease in type 2 diabetes, and evaluating patients presenting with whole genomes...3952 days ago
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Bio-Scripts
Download the genome from NCBI using bash script/command
#!/bin/bash # Download the genome from NCBI using command # C...l 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/fungi/assembly_summary...s|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...l 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary...2573 days ago
Download the gff files from NCBI using bash script/command
#!/bin/bash # Download the genome from NCBI using command # C...l 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/fungi/assembly_summary...s|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...l 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary...2564 days ago
- +9 more Bio-Scripts
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at th...this field should never expect a tool to do their analyses for them. Besides computation...l background can be able to perform bioinformatics analyses by him/herself without needin...2403 days ago
Groups
Our research interest falls in the broad field of bioinformatics and, more specifically into Computational Systems...genome assembly. Evolutionary Genomics Evolutions and their impact on genomes...3984 days ago
This group is being designed to cover some of the common algorithms underlying the following fundamental topics in bioinformatics: assembling genomes,...3943 days ago
Comments
Comment on "Genome in a Bottle (GIAB) Consortium"
...es:To establish best practices for using GIAB genomes for benchmarking, we have wor...script, GitHub Sequencing Data:Data and analyses from most short, linked, and...s by GIAB:Benchmark small variants for 7 GIAB genomesOlder benchmark small variants...1601 days ago
