Results for "r"
Bio-Scripts
Installing docker for Bioinformatics on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ sudo apt-get remove docker docker-engine docker.io containerd r...+ sudo -E sh -c echo "deb [arch=amd64] https://download.doc...hould now consider adding your user to the "docker" group wi...ate Create a new container deploy Deploy a new s...1574 days ago
Perl script to reads and extract webpage contents !
use 5.010; use strict; use warnings; use WWW::Mechanize; my ($url) = @ARGV; die "Usage: $0 URL\n" if not $url; my $w = WWW::Mechanize->new; $w->get($url); say $w->content; #Run #jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ perl web.pl https://bioinformaticsonline.com1574 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloads/autoConT...... Unpacking libpar-dist-perl (0.49-2) ... Selecting prev...analyzingcodonusage perl script analyzing codon usage...d efficient application to search and discover new patterns o...1572 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-3335-MT:~/Downloads$ cd jitt...OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSS...country, of encryption software. BEFORE using any encryption...0-py37_1 ... installing: bitarray-0.8.3-py37h14c3975_0 ......1572 days ago
Commands to install Statistics::R module in Ubuntu !
...apt-get install libstatistics-r-perl Reading package lists... Done Building dependency tree Reading state infor...1 [23.3 kB] Get:3 http://in.archive.ubuntu.com/ubuntu bionic...... Setting up libstatistics-r-perl (0.24-1) ... Processing...1572 days ago
- jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ sudo docker system df TYPE...b626604895fa8f20dcec Total reclaimed space: 2.049GB jit@j...--> 0974217c0b0e Step 6/12 : RUN apt-get install --yes bui...ime: runc Init Binary: docker-init init version: fec3683...
1570 days ago
- The procedure to find os name and version on Linux: #Open the terminal application (bash shell) #For remote server login using the ssh: ssh user@server-name #Type any one of...n Linux: cat /etc/os-release lsb_release -a hostnamectl #T...
1568 days ago
Install Ragout genome assembler
$ conda install -c bioconda ragout Collecting package metadata (repodata.json): done Solving environment: done ## Package Pla...added / updated specs: - ragout The following packa...llowing packages will be DOWNGRADED: decorator...1525 days ago
- $ conda install -c bioconda kraken Collecting package metadata (repodata.json): done Solving environment: done ## Package Pla...pkgs/main/linux-64::perl-5.26.2-h14c3975_0 Proce...857 B bioconda perl-threaded-5.26.0 |...
1523 days ago
Python script to check sequence length in multifasta file
#!/usr/bin/python from Bio import SeqIO import sys cmdargs = str(sys.argv) for seq_record in SeqIO.parse(str(sys.argv[1]), "fasta"): output_line = '%s\t%i' % \ (seq_record.id, len(seq_record)) print(output_line)1276 days ago
