Results for "NT"
Bio-Scripts
Create random 10000 SNPs in genome !
.../simuG.pl -refseq SGDref.R64-2-1.dups.fa -snp_count 10000 -prefix simuSNP [Sun...the random seed: 811014067 The option snp_count has been specified: snp_count...titv_ratio = 0.5 [Sun Jan 10 16:05:57 2021] Introducing random SNPs based on...1269 days ago
Create random 1000 INDEL in genome !
...simuSNP.simseq.genome.fa -indel_count 1000 -prefix simuINDEL [Su...: 1678440514 The option indel_count has been specified: indel_cou...he option indel_size_powerlaw_constant has been specified: indel_siz...nce-based vcf file for genomic variants introduced during simulation...1269 days ago
Create random 1000 CNVs in genome !
...simuINDEL.simseq.genome.fa -cnv_count 100 -prefix simuCNV [Sun J...eed: 678641233 The option cnv_count has been specified: cnv_count...000 [Sun Jan 10 16:24:20 2021] Introducing random CNVs with the...nce-based vcf file for genomic variants introduced during simulation...1269 days ago
Create random 5 inversions in genome !
...l -refseq simuCNV.simseq.genome.fa -inversion_count 5 -prefix simuINV [Sun Jan...andom seed: 639103429 The option inversion_count has been specified: inversion...ax_size = 100000 [Sun Jan 10 16:30:40 2021] Introducing random Inversions bas...1269 days ago
Create random 2 translocations in genome !
...efseq simuINV.simseq.genome.fa -translocation_count 2 -prefix simuTRANS [Sun J...seed: 1925195826 The option translocation_count has been specified: transloca...on the following parameters: > translocation_count = 2 [Sun Jan 10 17:12:58 2...1269 days ago
- ...arativeGenomics/wgd Requirement already satisfied: numpy>=1.1...wgd==1.2) (1.19.0) Requirement already satisfied: scipy>=1.2...>wgd==1.2) (1.15.0) Requirement already satisfied: python-dat...| 10.1 MB 38.9 MB/s Requirement already satisfied: pytz>=2011...
1266 days ago
- ....com/gpertea/gffread (jitENV) jitendra@Bathymodiolus:~$ conda install -c bioconda gffread Collecting package metadata (current_repodata.json): done Solving environment: done ## Package Plan ##...
1262 days ago
Set up WGD environment using conda !
...lled directly with bioconda at present, so it is slightly troublesom...Collecting package metadata (current_repodata.json): done Solving...Welcome to the wgd command line interface!...under certain conditions; Contact: arzwa@psb.vib-ugent.be...1262 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...dependencies of target alignment [ 3%] Building CXX object s...%x’ directive writing 1 byte into a region of size between 0 a...g: ignoring return value of ‘int system(const char*)’, declare...atasetI/arath_2_3_beta/AlignmentMultiplicon2.svg -- Installin...1262 days ago
Command to create conda environment !
# using pip pip install -r requirements.txt # using Conda conda create --name --file requirements.txt #Using yaml conda env create -f environment.yml #Listing env conda env list #Create env with python36 conda create -n myenv python=3.61259 days ago
