Results for "conda"
Bio-Scripts
Set up WGD environment using conda !
#Wgd cannot be installed directly with bioconda at present, so it is slightly trou...PAML #PhyML/FastTree #i-ADHoRe #Creat the conda ENV and install its deps #Follow the steps (base) ➜ wgd git:(master) conda create -n wgd python=3.7 blas...1253 days ago
Command to create conda environment !
# using pip pip install -r requirements.txt # using Conda conda create --name --file requirements.txt #Using yaml conda env create -f environment.yml #Listing env conda env list #Create env with python36 conda create -n myenv python=3.61250 days ago
Steps to install Conda on Linux !
Download the installer: Miniconda installer for Linux. ( https://docs.conda.io/en/latest/miniconda.html#linux-installers ) Anaconda installer for Linux. ( https:...0.11-Linux-x86_64.sh $ ./Anaconda3-2020.11-Linux-x86_64.sh #...nvironment named as `envname` conda create --name envname # Remo...1232 days ago
Conda command to install checkV
...V) [jnarayan@hn1 Monkey_Pox]$ conda install -c conda-forge -c bioconda checkv Col...h8619c78_1001 325 KB conda-forge boost-cpp-1.68.0...y36h5fab9bb_0 30 KB conda-forge kcounter-0.1.1...78_1001 boost-cpp conda-forge/linux-64::boost-cpp-1.6...685 days ago
- (JitMetaENV) ➜ setu git:(master) ✗ conda install -c bioconda ragout Collecting package metadata (current_repodata.json):...ne Solving environment: done ==> WARNING: A newer version of conda exists. pkgs/main::ca-certif...
1198 days ago
Install assembly-stat using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1104 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda ragout Collecting package metadata (cur...ne Solving environment: done ==> WARNING: A newer version of conda exists....
1104 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda spades Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1104 days ago
Install trimmomatic using Conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda trimmomatic Collecting package metadata...ne Solving environment: done ==> WARNING: A newer version of conda exists. pkgs/main::certifi-2...1104 days ago
Install grabseqs using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1104 days ago
