List of motif discovery tools !
...eins Search 3D protein fragments similar in structure to known active, binding and posttranslational modification sites. PEDANT -- Protein Extraction, Description and ANalysis Too...2134 days ago
List of comparative genomics resources !
...OrthoMaM -- orthologous mammalian markers A database of orthologous genomic markers for placental mammal phylogenetics. PEDANT -- Protein Extraction, Description and ANalysis Too...818 days ago
Entrez Direct: E-utilities on the UNIX Command Line
...p queries. Record retrieval and formatting normally complete the process. EDirect also provides an argument-driven function that simplifies the extraction of data from document summari...2896 days ago
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Blast result parser with Perl and Bioperl
...number\tlength\tdescription\tE value\tbit score\tframe\tquery_start\t"; print OUT "query_end\thit_start\thit_end\tpositives\tidentical\n"; # extraction of information for each resul...3055 days ago
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Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
...rge and we are using version 0.16 Once downloaded, and back at the Linux command line: R CMD INSTALL poRe_0.16.tar.gz The fastq extraction scripts for poRe are in githu...2315 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
Implementing Hidden Markov Models(HMM) for Information Extraction in Perl http://www.lwebzem.com/cgi-bin/res/HMM.html3958 days ago